| Component |
Version |
Inputs |
Outputs |
Description |
| ClusterFiltering |
1.0 |
fcsDir, in |
filtered, out |
Filters columns and/or rows from by clusters using flexible criteria. |
| CSVListFilter |
1.0 |
clusters, populations |
filtered, array |
Filters CSV files in a given folder according to the
to extract specific rows given output of AutoGating component. |
| FlowClustModeling |
0.1 |
fcsDir |
clusters, report |
Modeling FACS data using flowClust library. |
| OptimalClustering |
1.0 |
clusters, clustStat |
clusters, report |
The component takes the output of the MMClustering component,
where each data sample has been clustered with multiple different cluster
numbers, and determines the optimal cluster number for each sample. |
| SamSpectral |
1.1 |
list, in |
clusters, out |
SamSPECTRAL clustering of flow cytometry data as described by Zare et al (2010). |
Up: Components summary
Anna-Maria Lahesmaa-Korpinen