| Component |
Version |
Inputs |
Outputs |
Description |
| FastQScreen |
1.0 |
dbList, reads, mates |
folder, NoHitPercentage |
FastQScreen allows you to screen a library of sequences in FastQ format against a set of sequence databases, for example vectors, virus or ribosomal RNA, so you can see if the composition of the library matches with what you expect. |
| FusionAnalyzer |
1.0 |
in, csvs |
out, folder |
Post-processing tool for gene fusion analysis. |
| FusionCaller |
1.0 |
reads, mates |
out |
Gene fusion detection. |
| FusionVisualizer |
1.1 |
fusionList, annotations, reads, mates |
folder |
Post-processing tool for fusion transcripts visualization. |
| RUBIC |
1.0 |
segments, markers, genes |
gains, losses, plots |
RUBIC detects recurrent copy number aberrations using copy number breaks, rather than recurrently amplified or deleted regions. |
Up: Components summary
Gabriele Partel