Up: Components summary Author

Gabriele Partel

Component Version Inputs Outputs Description
FastQScreen 1.0 dbList, reads, mates folder, NoHitPercentage FastQScreen allows you to screen a library of sequences in FastQ format against a set of sequence databases, for example vectors, virus or ribosomal RNA, so you can see if the composition of the library matches with what you expect.
FusionAnalyzer 1.0 in, csvs out, folder Post-processing tool for gene fusion analysis.
FusionCaller 1.0 reads, mates out Gene fusion detection.
FusionVisualizer 1.1 fusionList, annotations, reads, mates folder Post-processing tool for fusion transcripts visualization.
RUBIC 1.0 segments, markers, genes gains, losses, plots RUBIC detects recurrent copy number aberrations using copy number breaks, rather than recurrently amplified or deleted regions.

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