Up: Components summary
Up: Components summary
Author
Julia Casado| Component | Version | Inputs | Outputs | Description |
|---|---|---|---|---|
| AnnotateDrugs | 1.0 | in, annotations | out | Annotate drug concentrations. |
| BiclustClusterer | 1.0 | in | rowClusts, colClusts, statistics | TODO. |
| Excel2CSV | 1.0 | in | out | Converts a Microsoft Excel sheet to a CSV file. |
| ExprTableReport | 1.0 | expr, ref, colLabels, annotation, geneSet, bodyMap | table, expressed, document, report | Generates expression statistics into an HTML report. |
| FCSReader | 1.0 | in, annotations | out, metadata | FCSReader imports a FCS file (standards 2.0 and 3.0 supported) and converts it into a tab-delimitted CSV file. |
| GTFParser | 1.0 | in | out | Extracts field contents from a GTF file to output a CSV file. |
| MicroplateReader | 1.0 | in, annotations | out | Reads multiple XLSX files generated by a fluorescence/luminescence reader for a 96 or 384 well plate and converts it into a tab-delimitted CSV file with the correct annotations for each well. |
| PlotChannels | 1.0 | in, fs | out | Component meant to visualize Flow and Mass Cytometry data before and after transformations. |
| PopulationTimeline | 1.0 | in | out | Currently it uses Wanderlust to calculate developmental trajectories within a population of single cell data. |
| Transformation | 1.0 | in | out | Cell fluorescense intensity transformation for FACS data. |
| TSNE | 1.1 | in | out, entropy | This component performs dimensionality reduction with an R wrapper of the C++ implementation of Barnes-Hut-SNE as described in http://lvdmaaten.github.io/tsne/. |