Up: Components summary
Up: Components summary
Author
Miko Valori| Component | Version | Inputs | Outputs | Description |
|---|---|---|---|---|
| Fiji | 1.0 | command, table, in1, in2, in3, in4, in5, inArray, file1, file2 | out, out2, tableOut | Executes a Jython script under Fiji (ImageJ) that generates an image directory from given image directories. |
| FijiFeatures | 1.0 | images, mask | out | Uses Fiji to extract features from input images, segmented with masks. |
| SegmentFiji | 0.1 | in | mask, perimeter | Produces binary mask images, segmenting the input images using Fiji. |
| VariantAnnotator | 0.4 | variantQuery, reference | calls, log, raw | This component is not being actively maintained currently, since Annovar is updated to frequently. |
| VCF2AnnotatedCSV | 1 | vcf | annotated | A quick and dirty wrapper for ANNOVAR. |