Viljami Aittomaki

Component	Version	Inputs	Outputs	Description
BiomartAnnotator	1.3	filter	annotations, databases	Fetches attributes with given filters using BioMart.
BreakpointVisualizer	0.1.1	cna, rearrangements	report	Visualizes genomic breakpoints resulting from copy-number aberrations (amplifications and deletions) and chromosomal rearrangements (translocations and inversions).
HTMLTable	0.7	in, style	out	Creates an interactive HTML table of input data.
JASPARMotif	2.0.3	IDs	motifs, annotations	Writes JASPAR motif matrices into a MotifSet directory.
LimmaNormalizer	0.6	green, greenBG, red, redBG, groups	logratio	Normalizes two-channel and single-channel microarrays using the Bioconductor Limma package.
MDSPlot	2.2	expr, groups	mdsCoOrdinates, report	Plots multidimensional scaling of numeric data.
RefSNPAnnotator	1.1.3	rsIDs	annotations, geneChanges, databases	Fetches annotations for given SNP rsID's with biomaRt.
SigPathway	1.0	expr, samplegroup	pathways	Performs pathway analysis by computing NEk and NTk statistics described in Tian et al (2005).
SPIA	1.1	deg, reference	pathways, pathwayGenes	Performs pathway analysis using Signaling Pathway Impact Analysis (formerly known as Pathway-Express).
WekaClusterer	1.0	in	out	Clusters data using clustering methods implemented in Weka.
WekaTransform	1.3	in	out	Transforms data using filter classes implemented in Weka.

Generated 2019-02-08 07:42:06 by Anduril 2.0.0