Up: Category summary
Up: Category summary
Category
Affy| Parent category | Data Import |
|---|---|
| Description | AffyMetrix SNP, exon and DNA microarrays |
| Component | Version | Inputs | Outputs | Description |
|---|---|---|---|---|
| AffyNormalization | 1.0 | affy, sampleNames | report | Reads in Affymetrix gene expression microarrays and compares various normalization methods. |
| AffyReader | 1.1.2 | affy, sampleNames | expr, exprRaw, groups | Imports gene expression or exon array data from Affymetrix CEL-files. |
| AffySNPFetch | 1.0 | markernames, connection | rsnumbers | Fetches SNP rs-numbers from Ensembl based on Affy SNP-ids. |
| SNPArrayReader | 1.7 | dataDir, sampleNames | genotypeMatrix, markerNames, copynumberMatrix, probeAnnotation | Imports genotype data from Illumina SNP and Affymetrix SNP 6.0 or 5.0 files. |