| Component |
Version |
Inputs |
Outputs |
Description |
| AttributeVisualizer |
1.0.1 |
annotation, matrix |
report |
Visualizes multidimensional attributes using a heat map together with
a clustering dendrogram. |
| BackSPIN |
1.0 |
in |
rowClusts, colClusts, permutedInput |
Biclustering of gene expression data using the BackSPIN algorithm. |
| BayesianBiclustering |
1.0 |
input_matrix |
bayesian_biclustering_output |
Perform Bayesian Biclustering on a data matrix. |
| BiclustClusterer |
1.0 |
in |
rowClusts, colClusts, statistics |
TODO. |
| ClusterAnnotator |
1.0 |
data, annotations |
originalPlot, annotPlot, splits |
Produces a hierarchical clustering of the samples and assigns
the provided annotations to the brances of the clustering tree. |
| ClusterReorder |
1.0 |
in |
out |
Re-orders cluster ID numbers based on a given data vector. |
| ClusterReport |
1.1 |
matr |
report, tree |
Performs a hierarchical clustering of samples. |
| FSomMetaClustering |
1.0 |
in |
out, fullData |
Creates self-organizing maps of cytometry data with FlowSOM algorithm
and meta clusters the data based on 100 fSOM-maps with consensus clustering. |
| GOClustering |
1.1.3 |
goAnnotations, expr, similarityTable |
report, clusters |
Clusters genes based on their gene ontology (GO) annotations. |
| ISABiclust |
1.0 |
in |
labels, rowClusters, colClusters |
Does Biclustering using iterative signature algorithm-package. |
| LinearBinner |
1.0 |
in |
binned, cluster |
A very basic clustering-like method. |
| PhenographClusterer |
1.0 |
in |
out, graph |
Clusters data using Phenograph clustering method. |
| QUBICClusterer |
1.0 |
in |
rowClust, colClust |
Qualitative biclustering algorithm (QUBIC). https://bioconductor.org/packages/release/bioc/html/QUBIC.html. |
| WekaClusterer |
1.0 |
in |
out |
Clusters data using clustering methods implemented in Weka. |
| XShiftClusterer |
1.0 |
in |
out |
Clusters data using the original implementation of the X-shift algorithm. |
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Clustering