| Component |
Version |
Inputs |
Outputs |
Description |
| AnnTools |
0.1 |
variants |
array, log |
Runs one of the AnnTools variant annotator suite's scripts. |
| Ant |
2.0 |
data0, data1, data2, data3, data4, data5, data6, data7, data8, data9, array0, array1, array2, config, script |
output0, output1, output2, output3, output4, output5, output6, output7, output8, output9 |
Anduril wrapper for Apache Ant. |
| BashEvaluate |
1.4.2 |
array1, array2, array3, command, var1, var2, var3, var4, var5, var6, vararray |
scriptOut, stdOut, stdErr, out1, out2, out3, folder1, folder2, folder3, arrayOut1, arrayOut2, arrayOut3 |
Executes a Bash script that generates any output from the given data or other inputs. |
| CGHubDownload |
0.1 |
key, analysisIds |
queryResults, queryResultCSV, data |
Executes CGHub's GeneTorrent package's utilities. |
| GNUPlot |
0.5 |
in, script, optScript |
scriptOut, out |
Executes a GNUPlot script that generates any output from the given data or other inputs. |
| GroupFiles |
0.1 |
in |
out |
Produces a CSV annotated by parsing path names containing named groups. |
| MatlabEvaluate |
1.0 |
script, table1, table2, table3, table4, table5, var1, var2, var3, var4, var5, var6, var7, var8, var9 |
table, optOut1, optOut2, optOut3, document |
Executes a Matlab script that generates a matrix from the given data. |
| PythonEvaluate |
0.5 |
scriptIn, table1, table2, table3, table4, table5, var1, var2, var3, inArray, folder, vararray |
table, outArray, out1, out2, out3 |
Executes an Python script. |
| QuickBash |
1.0 |
in, command |
out |
Executes a Bash script that generates any output from the given data or other inputs. |
| REvaluate |
2.2 |
script, table1, table2, table3, table4, table5, var1, var2, var3, inArray |
table, outArray, optOut1, optOut2, optOut3, document |
Executes an R script that generates a matrix from the given data. |
| Rsync |
1.0 |
inFile, inFolder |
outFile, outFolder |
Uses rsync to fetch or push files. |
| ScalaEvaluate |
1.0 |
scriptFile, table1, table2, table3, table4, table5, var1, var2, var3 |
table, optOut1, optOut2, optOut3, scriptOut |
Executes a Scala script. |
| ScalaScript |
1.0 |
scriptFile, in1, in2, in3 |
out1, out2, out3, scriptOut |
Scripts Scala source code and executes it via scala.sys.process.Process. |
| Traph |
0.1 |
fragments |
folder |
Traph RNA-seq abundance estimator from Veli Mäkinen lab. |
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