| Component |
Version |
Inputs |
Outputs |
Description |
| GOClustering |
1.1.3 |
goAnnotations, expr, similarityTable |
report, clusters |
Clusters genes based on their gene ontology (GO) annotations. |
| GOEnrichment |
1.0.4 |
goAnnotations, enrichmentTable |
goTerms, graphBP, graphCC, graphMF |
Computes enriched GO terms in a set of genes or proteins. |
| GOFilter |
1.2 |
bioAnnotation, in |
out |
Filters gene lists based on Gene Ontology annotations. |
| GOProbabilityTable |
1.0 |
goAnnotation |
similarityTable, enrichmentTable |
Creates custom a priori probability tables for GO similarity and enrichment analysis. |
| GOSearch |
1.1 |
bioAnnotation, go |
hits |
Filters gene lists based on Gene Ontology annotations. |
| GSEAAnalyzer |
1.0 |
annotation, expr, sampleGroupTable |
report, ResultTable |
Performs Gene Set Enrichment Analysis by using category definitions from KEGG or GO. |
| KorvasieniAnnotator |
1.9 |
sourceKeys, connection |
bioAnnotation |
Converts gene, transcription, and translation identifiers using Korvasieni. |
Up: Category summary
GO