| Component |
Version |
Inputs |
Outputs |
Description |
| CSV2GraphML |
1.0 |
in |
out |
Converts a matrix or CSV representation of a graph to GraphML. |
| Directed2Undirected |
1.0 |
in |
out |
Converts a directed graph into undirected graph. |
| GraphAnnotator |
1.1 |
graph, graphAttributes, vertexAttributes, edgeAttributes |
graph, graphAttributes, vertexAttributes, edgeAttributes |
Inserts or extracts attributes from GraphML files using CSV files. |
| GraphMetrics |
1.0 |
graph |
graphMetrics, vertexMetrics |
Computes various graph metrics for a GraphML file. |
| GraphSplitter |
1.0 |
in |
out |
Splits a graph into subgraphs that are either connected or strongly connected
(case of directed graph) components. |
| GraphVisualizer |
1.2 |
in |
out |
Creates a visualization of a graph using Graphviz. |
| KGML2GraphML |
1.0 |
kgml |
pathway |
Converts a KEGG pathway (KGML) to a GraphML file. |
| TreeSplitter |
1.02 |
tree, nodeAnnotations |
newTree, splits |
Splits the leafs of a tree into two sets such that the mutual information between the split and
leaf annotations is maximized. |
| VertexJoin |
1.4 |
in |
out, joins |
Simplifies the given graph by merging vertices with an equal set of edges. |
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Graph