| Component |
Version |
Inputs |
Outputs |
Description |
| BackgroundSubtract |
1.1 |
in, opt |
out |
Performs background subtraction for a directory of images with various methods. |
| BFConvert |
1.0 |
in |
out |
Wrapper for the Bioformats command line tool for converting exotic image formats. |
| BFMetadata |
1.0 |
in |
raw, ome |
Wrapper for the Bioformats command line tool for extracting metadata from exotic image formats. |
| CellProfiler |
1.0 |
pipeline, in1, in2, in3, in4, in5, in6, in7, in8, in9 |
out1, out2, out3, out4, out5, out6, out7, out8, out9, pipelineDebug |
Runs a pipeline in CellProfiler, for a folder or several folders of images. |
| ImageMagick |
1.2 |
ina1, ina2, in1, in2, in, commandFile, f1, f2 |
out |
A versatile wrapper for using ImageMagick convert, for folder(s) of images. |
| MatlabOp |
1.2 |
command, table, in1, in2, in3, in4, in5, inArray, file1, file2 |
out, out2, tableOut |
Executes a Matlab script that generates an image directory from given
image directories. |
| MRXSConvert |
1.1 |
in |
out, label |
Exports MRXS images in to PNGs, cropping them to small images. |
| SegmentGraphCut |
1.1 |
in |
mask, perimeter |
Segmentation based on graph cutting. |
| SegmentImage |
2.3 |
in, opt, seed |
mask, perimeter, numbered, masklist |
Segments a directory of images with various methods. |
| SegmentSeeded |
1.0 |
in, seed, colors |
mask, perimeter, numbered |
Segments a directory of images with various methods, using a seed (a previous mask helping in refining the segmentation). |
| ShapeFitting |
0.1 |
images, shape, names |
limits, location, orientation, scale |
Fits a user given shape on image data by changing the location, orientation and scale of the shape. |
| SpiralJoin |
1.0 |
in |
out |
Joins grayscale images together in a montage, or splits a montage in to
separate images in a spiral fashion. |
| StackProjection |
1.0 |
in, toMap |
out, map, mapped |
Projects a grayscale z-stack to a 2D image. |
| TextDraw |
1.1 |
images, text, names |
out |
Write text on a bitmap image with a small font. |
| Watershed |
2.0 |
images, seed |
mask, lines, perimeter |
Methods to divide objects in a mask, or grayscale images. |
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Image Processing