| Component |
Version |
Inputs |
Outputs |
Description |
| ACGHnorm |
1.4 |
caseIn, control, admixtureMatrix, probeAnnotation |
casechannel, controlchannel, fit |
Normalizes two channel array CGH data with LOESS, median or mode. |
| AffyNormalization |
1.0 |
affy, sampleNames |
report |
Reads in Affymetrix gene expression microarrays and compares various normalization methods. |
| HTSeqExprNormalize |
0.1 |
expr |
array |
Takes as input "raw", integer count expression matrix of quantified sequenced reads and outputs a scale-normalised, log-transformed expression matrix. |
| IlluminaNormalization |
1.0 |
in |
out |
Performs between array normalization for an input matrix. |
| LimmaNormalizer |
0.6 |
green, greenBG, red, redBG, groups |
logratio |
Normalizes two-channel and single-channel microarrays using the Bioconductor
Limma
package. |
| LinearNormalizer |
1.0 |
in |
out |
Normalizes the input matrix column-wise. |
Up: Category summary
Normalization