Novel smallRNA

Parent category	smallRNA
Description	Components that identify and analyze putative novel miRNAs and other smallRNAs.

Component	Version	Inputs	Outputs	Description
NCRNAAnnot	1.0	expression, gtf	annotated	Creates reference files for gene features and known ncRNAs and creates additional columns for a putatively novel miRNA expression matrix with information on relative genomic location (e.g. intragenic/intergenic, host gene and transcript) and neighbouring or overlapping ncRNAs.
NovelExprMatrix	1.0	novelArray	csv, csv_wID	Take output of `miRanalyzer` (or `miRDeep2`) and create an expression matrix with the putative novel miRNAs found.
NovelMatureSeq	0.1	novel, fqFiles	mature, array	Given a set of putative novel miRNA regions (e.g. output from miRanalyzer or miRDeep2), retrieves consensus functional "mature" region that can then be used for predicting target genes (e.g. as input to `MirMatch`.
NovelMirnas	1.0	fqFiles, mirDP_genome, mirDP_mature, mirDP_related_mature, mirDP_precursor	array	Performs novel miRNA discovery using miRanalyzer or mirDeep2, depending on what is installed and what you want to use.

Generated 2019-02-08 07:42:06 by Anduril 2.0.0