Pathway

Parent category	Analysis
Description	Pathway databases, SBML tools

Component	Version	Inputs	Outputs	Description
GSEAAnalyzer	1.0	annotation, expr, sampleGroupTable	report, ResultTable	Performs Gene Set Enrichment Analysis by using category definitions from KEGG or GO.
KGML2GraphML	1.0	kgml	pathway	Converts a KEGG pathway (KGML) to a GraphML file.
ModelicaCompiler	0.5	sourceModel	binaryModel, flatModel	Compile a Modelica model into binary form using OpenModelica.
ModelicaSimulator	0.5	binaryModel, parameters	timepoints	Simulate a Modelica model by executing a compiled model.
SBML2GraphML	1.0	model	graph	Visualizes an SBML model as a GraphML file.
SBML2HTML	1.0	model	report	Prints the contents of an SBML model as a HTML file.
SBMLSimulator	1.2	in	plot, timepoints	Simulates an SBML model using SBML ODE Solver.
SBMLTable	1.3	model, species, reactions, parameters, compartments, rules, events, annotations	model, species, reactions, parameters, compartments, rules, events, annotations_out	Extracts SBML attributes into a CSV file, or imports attributes from a CSV file.
SigPathway	1.0	expr, samplegroup	pathways	Performs pathway analysis by computing NEk and NTk statistics described in Tian et al (2005).
SPIA	1.1	deg, reference	pathways, pathwayGenes	Performs pathway analysis using Signaling Pathway Impact Analysis (formerly known as Pathway-Express).
SVDAnalyzer	1.0	annotation, expr, sampleGroupTable	report, resultTable	Performs Singular Value Decomposition to gene sets to test whether a set of genes is significantly differentially expressed.

Generated 2019-02-08 07:42:06 by Anduril 2.0.0