| Component |
Version |
Inputs |
Outputs |
Description |
| AttributeVisualizer |
1.0.1 |
annotation, matrix |
report |
Visualizes multidimensional attributes using a heat map together with
a clustering dendrogram. |
| BoxPlot |
1.3.1 |
in1, in2, in3, groups, dataPoints |
out |
Creates box plots for numeric data. |
| CircosPlot |
0.7 |
data, data2, data3, data4, data5, data6, data7, data8, data9, data10, data11, dataAnnotation, plotAnnotation, links, highlights, plotParams, karyotype |
circos, ideogram, ticks, plot |
Draws circos plots from genomic data. |
| GraphVisualizer |
1.2 |
in |
out |
Creates a visualization of a graph using Graphviz. |
| HistogramPlot |
1.1 |
in, plotAnnotator |
frequencies, midpoints, out |
Counts the frequencies and makes a line plot of histogram values. |
| IlluminaPlot |
1.1 |
in |
out |
Produces quality control plots. |
| InteractionPlot |
1.0 |
interactions, expression, groups |
plot |
Plots the distribution of the expression of two genes. |
| MutationContextPlot |
0.1 |
array, in |
plot |
Draws mutation context plots for sequencing samples. |
| Plot2D |
1.0 |
y, x, labels, plotAnnotator |
out |
Creates scatter, line or bar plots where Y and X coordinates come from CSV files. |
| PlotHTML |
0.1 |
data, template |
plot |
Creates scatter, line or bar plots where Y and X coordinates come from JSON files. |
| PlotTreeHTML |
1.0 |
treeStructure, metadata, imageData |
plot |
Produces a plot of a tree (or forest) in a html page. |
| RiskRatioPlot |
1.0 |
in |
out |
Creates a visualization for a list of risk ratios and their confidence intervals. |
| SpatialPlot |
1.4 |
geneAnnotation, channel1, channel2, logratio |
report |
Creates spatial plots for red/green channels, log ratios
and spot quality. |
| VennDiagram |
1.1.2 |
in |
report, out |
Draws Venn diagrams showing the intersections of the given sets of
identifiers. |
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