Quality Control

Parent category	Preprocessing
Description	Plots and functions for quality control

Component	Version	Inputs	Outputs	Description
BoxPlot	1.3.1	in1, in2, in3, groups, dataPoints	out	Creates box plots for numeric data.
DuplicateQuality	1.0	expr, geneAnnotation	report	Estimates microarray chip quality by printing expression distributions for duplicate probes.
ExprMixtureModel	1.4	expr, annot, groups	stats, report, samplesets	Provides a mixture model fit of two normal distributions for the given genes.
ExtractCond	0.1	exprMatrix, reference	table	Creates a custom input file defining treatment groups for `MDSPlot` component using expression matrices and a reference file.
MDSPlot	2.2	expr, groups	mdsCoOrdinates, report	Plots multidimensional scaling of numeric data.
SpatialContrast	1.0	expr, geneAnnotation	report	Finds two spatial regions in expression data that have a maximum contrast in average expression value.
SpatialPlot	1.4	geneAnnotation, channel1, channel2, logratio	report	Creates spatial plots for red/green channels, log ratios and spot quality.

Generated 2019-02-08 07:42:06 by Anduril 2.0.0