| Name |
Description |
| Alignment |
Short read alignment tools. |
| Analysis |
Data analysis components. |
| Classification |
Data classifiers |
| Clustering |
Components that employ clustering based methods |
| Convert |
Conversion between data types, CSV set operations |
| Copy Number Analysis |
ArrayCGH data analysis |
| DNA Methylation |
Components that analyze DNA methylation data. |
| DEG |
Fold change, differential expression |
| Exon |
Transcript expression analysis |
| GO |
Gene Ontology (GO) tools |
| Graph |
Graph plots, graph annotation, graph creation |
| Integration |
Exon and gene expression data integration with other data |
| Meap |
Multiple exon array preprocessing and expression quantification at probeset, exon, spliced variant and gene levels. |
| Multivariate Statistics |
Multivariate analysis tools |
| Pathway |
Pathway databases, SBML tools |
| Sequence Motif |
Sequence motif discovery and analysis |
| Short-read Sequencing |
Analysis of sequencing data produced by next-generation sequencing platforms e.g. Illumina/Solexa |
| SNP |
SNP analysis |
| Survival |
Kaplan-Meier survival estimates and plots |
| Annotation |
Tools that enable fetching annotations from external
and internal databases. |
| Assembly |
De novo assembly of sequencing reads. |
| CopyNumberAnalysis |
Copy number analysis tools. |
| Data Import |
Data import from platforms such as microarrays. |
| Affy |
AffyMetrix SNP, exon and DNA microarrays |
| Agilent |
Agilent Array CGH and DNA microarrays |
| Illumina |
Illumina microarrays |
| Expression |
Gene expression analysis tools. |
| FlowCytometry |
Data analysis components. |
| FACSClustering |
Methods for clustering flow cytometry data. |
| FACSPreprocessing |
Preprocessing methods for flow cytometry data. |
| FACSFilter |
Filtering methods for flow cytometry data. |
| FACSReporting |
Report results. |
| FACSSummary |
Summarize intensities across patients. |
| Imaging |
Components related to imaging, image analysis and image processing. |
| Image Analysis |
Components that change the image in to other type of data tables |
| Image Processing |
Components that process image contents |
| Image Generation |
Components that generate image content |
| Image Transformation |
Components that transforms between image formats |
| Data Analysis |
Components that analyze data with imaging / geometry related semantics |
| Image Visualization |
Components that combine several images or data with images. |
| Network Control |
Flow control of Anduril networks. |
| Internal |
Input, Output and Pause |
| Testing |
System testing |
| External |
Invoke scripts or commands outside of Anduril runtime environment |
| Preprocessing |
Imported data is filtered, normalized and checked against quality controls. |
| Normalization |
Different normalization components and methods |
| Quality Control |
Plots and functions for quality control |
| Filter |
Filters and combiners for files from various array types |
| Quality control |
Short reads quality control. |
| Reporting |
Formatting of analysis results for reporting and export. |
| Plot |
Generic visualization components |
| Latex |
Latex manipulation and output |
| Excel |
Microsoft excel file format |
| HTML |
HTML document creation |
| smallRNA |
Components related to miRNAs, ncRNAs, and the processing and analysis of small size-selected sequenced reads (less than 2kb). |
| Novel smallRNA |
Components that identify and analyze putative novel miRNAs and other smallRNAs. |
| VariationAnalysis |
Genetic variation analysis tools. |
See also: Data type documentation
Component documentation
Categories