Up: Component summary
Up: Component summary
Component
BFMetadataWrapper for the Bioformats command line tool for extracting metadata from exotic image formats.
| Version | 1.0 |
|---|---|
| Bundle | anima |
| Categories | Image Processing |
| Authors | Ville Rantanen (ville.rantanen@helsinki.fi) |
| Issue tracker | View/Report issues |
| Requires | bash ; Bioformats bftools ; installer (bash) |
| Source files | component.xml bfmeta.sh |
| Usage | Example with default values |
Inputs| Name | Type | Mandatory | Description |
|---|---|---|---|
| in | BinaryFolder | Mandatory | Input folder of images, any format recognized by Bioformats library. |
Outputs| Name | Type | Description |
|---|---|---|
| raw | BinaryFolder | Folder of text files with metadata. Format may be image format specific. |
| ome | BinaryFolder | Folder of XML files with metadata. |
Parameters| Name | Type | Default | Description |
|---|---|---|---|
| filter | string | ".*" | Case insensitive filtering of input files with GNU grep (ex. "tif") |
Test cases| Test case | Parameters▼ | IN in |
OUT raw |
OUT ome |
||
|---|---|---|---|---|---|---|
| case1 | properties | in | raw | ome | ||
|
metadata.timeout=0 |
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