Up: Component summary
Up: Component summary
Component
CSV2FASTAConverts the given comma separated value file to a FASTA file.
| Version | 1.0 |
|---|---|
| Bundle | microarray |
| Categories | Convert |
| Authors | Marko Laakso (Marko.Laakso@Helsinki.FI) |
| Issue tracker | View/Report issues |
| Requires | asser.jar (jar) |
| Source files | component.xml |
| Usage | Example with default values |
Inputs| Name | Type | Mandatory | Description |
|---|---|---|---|
| in | CSV | Mandatory | Input relation |
Outputs| Name | Type | Description |
|---|---|---|
| out | FASTA | Extracted sequences |
Parameters| Name | Type | Default | Description |
|---|---|---|---|
| idCol | string | "id" | Optional name of the column that contains identifier names for the sequences. Identifiers are generated based on the name of the component instance if this column is not found or if it contains missing values. |
| seqCol | string | (no default) | Name of the sequence column of the input file |
Test cases| Test case | Parameters▼ | IN in |
OUT out |
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|---|---|---|---|---|---|---|
| case1 | properties | in | out | |||
|
seqCol=seq |
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| case2 | properties | in | out | |||
|
seqCol=seq, |
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