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Up: Component summary
Component
CSVListFilterFilters CSV files in a given folder according to the to extract specific rows given output of AutoGating component. The output can be used for further clustering. NOTE: Only works if the input CSVList has 10 files!
| Version | 1.0 |
|---|---|
| Bundle | flowand |
| Categories | FlowCytometry |
| Authors | Anna-Maria Lahesmaa-Korpinen (anna-maria.lahesmaa@helsinki.fi) |
| Source files | component.xml csvlistfilter.sh |
| Usage | Example with default values |
Inputs| Name | Type | Mandatory | Description |
|---|---|---|---|
| clusters | CSVList | Mandatory | Folder of unfilered CSV files. |
| populations | CSVList | Mandatory |
Outputs| Name | Type | Description |
|---|---|---|
| filtered | CSVList | Folder with filtered CSV files. |
| array | Array<CSV> | Array with filtered CSV files. |
Parameters| Name | Type | Default | Description |
|---|---|---|---|
| clusterColumn | string | "cluster" | Column name in "clusters"-files that contains cluster values. If the parameter is empty, the first column is used. |
| populationName | string | "Lymphocytes" | A string that specifies the population name used for filtering. Same as "ClusterIdentifier" in GatingSummary. |
Test cases| Test case | Parameters▼ | IN clusters |
IN populations |
OUT filtered |
OUT array |
|
|---|---|---|---|---|---|---|
| case1 | properties | clusters | populations | (missing) | (missing) | |
|
populationName=CellType1, |
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| case2 | properties | clusters | populations | (missing) | (missing) | |
|
clusterColumn=PrimaryGates |
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