Up: Component summary
Up: Component summary
Component
ClusterChooserGraphical tool for cluster population selection.
| Version | 1.0 |
|---|---|
| Bundle | flowand |
| Categories | FACSClustering FlowCytometry |
| Authors | Ping Chen (ping.chen@helsinki.fi) |
| Requires | flowGraph.jar (jar) |
| Source files | component.xml ClusterChooser.java |
| Usage | Example with default values |
Inputs| Name | Type | Mandatory | Description |
|---|---|---|---|
| population | CSVList | Mandatory | Automatically gated cell populations. |
| plots | Latex | Mandatory | Plots of clusters. |
| sampleAnnotation | CSV | Mandatory | Sample annotation file. |
Outputs| Name | Type | Description |
|---|---|---|
| corrected | CSVList | Corrected cell populations. |
| fileStatus | CSV | File status file ('Accept' or 'Fail'). |
Parameters| Name | Type | Default | Description |
|---|---|---|---|
| annoColumn | string | "PatientID" | The name of column which contains file annotations. |
| fileColumn | string | "Filename" | The name of column which contains csv filenames. |
Test cases| Test case | Parameters▼ | IN population |
IN plots |
IN sampleAnnotation |
OUT corrected |
OUT fileStatus |
|---|---|---|---|---|---|---|
| case1 | properties | population | plots | sampleAnnotation | corrected | fileStatus |
|
metadata.timeout=0 |
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| case2 | properties | population | plots | sampleAnnotation | corrected | fileStatus |
|
metadata.timeout=0 |
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