Up: Component summary
Up: Component summary
Component
CombinationMatrixCompute the plate statistics for the plate survival assays and for dummy plates. It also plots colored matrices showing the distribution of luminascence intensities across the plate.
| Version | 1.0 |
|---|---|
| Bundle | dsrt |
| Categories | Preprocessing Excel |
| Authors | Chiara Facciotto (chiara.facciotto@helsinki.fi) |
| Requires | R ; xlsx (R-package) |
| Source files | component.xml CombinationMatrix.r |
| Usage | Example with default values |
Inputs| Name | Type | Mandatory | Description |
|---|---|---|---|
| in | Array<CSV> | Mandatory | Array of CSV with the measurements from each plate. |
Outputs| Name | Type | Description |
|---|---|---|
| out | BinaryFolder | Folder containing combination data. |
| matrices | BinaryFolder | Folder containing combination matrix plots. |
| plots | BinaryFolder | Folder containing inhibition plots. |
Parameters| Name | Type | Default | Description |
|---|---|---|---|
| neg | string | "DMSO" | Name of the negative control. |
| pos | string | "BzCl" | Name of the positive control. |