Up: Component summary
Up: Component summary
Function
EnsemblGenesRetrieves the Ensembl gene locations. The organism is given in the connection input where the query database is defined. Currently human and mouse databases are supported.
| Version | 1.0 |
|---|---|
| Bundle | sequencing |
| Categories | Annotation |
| Authors | Ping Chen (ping.chen@helsinki.fi) |
| Issue tracker | View/Report issues |
| Source files | component.xml function.scala |
| Usage | Example with default values |
Inputs| Name | Type | Mandatory | Description |
|---|---|---|---|
| connection | Properties | Mandatory | Ensembl database connection configuration file. |
Outputs| Name | Type | Description |
|---|---|---|
| codingGene | DNARegion | Ensembl coding gene locations. |
| otherGene | DNARegion | Non-coding Ensembl gene locations. |
Test cases| Test case | Parameters▼ | IN connection |
OUT codingGene |
OUT otherGene |
|---|---|---|---|---|
| case1 | (missing) | connection | codingGene | otherGene |