Up: Component summary
Up: Component summary
Component
FASTA2CSVConverts a FASTA file to CSV.
| Version | 1.0 |
|---|---|
| Bundle | sequencing |
| Categories | Convert |
| Authors | Ping Chen (Ping.Chen@Helsinki.FI) |
| Issue tracker | View/Report issues |
| Source files | component.xml FASTA2CSV.pl |
| Usage | Example with default values |
Inputs| Name | Type | Mandatory | Description |
|---|---|---|---|
| in | FASTA | Mandatory | FASTA sequences |
Outputs| Name | Type | Description |
|---|---|---|
| out | CSV | Converted CSV file with identifiers as 1st column and sequences as 2nd column. |
Parameters| Name | Type | Default | Description |
|---|---|---|---|
| idCol | string | "id" | Name of the identifier column of the output file. |
| seqCol | string | "seq" | Name of the sequence column of the output file |
Test cases| Test case | Parameters▼ | IN in |
OUT out |
|---|---|---|---|
| case1 | (missing) | in | out |