Up: Component summary
Up: Component summary
Component
FijiFeaturesUses Fiji to extract features from input images, segmented with masks.
| Version | 1.0 |
|---|---|
| Bundle | anima |
| Categories | |
| Authors | Miko Valori (miko.valori@helsinki.fi) |
| Issue tracker | View/Report issues |
| Requires | Fiji |
| Source files | component.xml fijistart.py fijifeatures.sh |
| Usage | Example with default values |
Inputs| Name | Type | Mandatory | Description |
|---|---|---|---|
| images | ImageList | Mandatory | Grayscale images to be measured |
| mask | ImageList | Mandatory | Mask images defining the measured objects |
Outputs| Name | Type | Description |
|---|---|---|
| out | CSV | Table reporting the measured features |
Parameters| Name | Type | Default | Description |
|---|---|---|---|
| display | boolean | false | Set to true to use the current DISPLAY. When false, tries to send screen to Xvfb (if installed), use with debugging etc.. |
| fourConnected | boolean | false | Use 4-connected objects? (default is 8-connected) |
| invert | boolean | false | Set true to invert mask. |
| minArea | int | 0 | Minimum area of objects to be measured |
| minCirc | float | 0 | Minimum circularity for objects to be measured |
Test cases| Test case | Parameters▼ | IN images |
IN mask |
OUT out |
||
|---|---|---|---|---|---|---|
| case1 | properties | images | mask | out | ||
|
fourConnected=false, |
||||||