Up: Component summary
Up: Component summary
Component
ISABiclustDoes Biclustering using iterative signature algorithm-package.
| Version | 1.0 |
|---|---|
| Bundle | tools |
| Categories | Clustering |
| Authors | Oskari Lehtonen (oskari.lehtonen@helsinki.fi) |
| Issue tracker | View/Report issues |
| Requires | isa2 (R-package) |
| Source files | component.xml ISABclust.r |
| Usage | Example with default values |
Inputs| Name | Type | Mandatory | Description |
|---|---|---|---|
| in | CSV | Mandatory | Input data, tab separated file. Numeric with column and rownames |
Outputs| Name | Type | Description |
|---|---|---|
| labels | CSV | Matrix of class labels. Zero mean, no membership |
| rowClusters | CSV | Membership probability for each row in the input data |
| colClusters | CSV | Membership probability for each column in the input data |
Parameters| Name | Type | Default | Description |
|---|---|---|---|
| thrLow | float | 0 | Lower threshold value for clusters. In units of standard deviation. |
| thrStep | float | 0.5 | Threshold step size |
| thrUp | float | 1.5 | Upper threshold value for clusters. In units of standard deviation. |
Test cases| Test case | Parameters▼ | IN in |
OUT labels |
OUT rowClusters |
OUT colClusters |
|---|---|---|---|---|---|
| case1 | (missing) | in | labels | rowClusters | colClusters |