Up: Component summary
Up: Component summary
Component
ImageSummarySummarises a directory of images, with one line for each image. An optional mask can be used to calculate foreground/background properties.
| Version | 1.0 |
|---|---|
| Bundle | anima |
| Categories | Image Analysis |
| Authors | Ville Rantanen (ville.rantanen@helsinki.fi) |
| Issue tracker | View/Report issues |
| Requires | Matlab |
| Source files | component.xml imagesummary.m execute.m |
| Usage | Example with default values |
Inputs| Name | Type | Mandatory | Description |
|---|---|---|---|
| gray | ImageList | Mandatory | A directory with grayscale image files. |
| mask | ImageList | Optional | A directory with BW mask image files. |
| names | ImageList | Optional | A directory with the original image files, for naming the table. If omitted, names from "gray" are used. |
Outputs| Name | Type | Description |
|---|---|---|
| out | CSV | List of feature values. |
Parameters| Name | Type | Default | Description |
|---|---|---|---|
| percentile | float | 1 | Intensity percentiles calculated from image. Both N and 100%-N will be calculated. Use values 0-100. |
| prefix | string | "" | Prefix string for data headers in the result table. Used when reading the same images with multiple parameters and then joining the results. |
Test cases| Test case | Parameters▼ | IN gray |
IN mask |
IN names |
OUT out |
|
|---|---|---|---|---|---|---|
| case1 | properties | gray | mask | (missing) | out | |
| case2 | properties | gray | (missing) | (missing) | out | |
|
percentile=25 |
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