Up: Component summary
Up: Component summary
Component
MRXSConvertExports MRXS images in to PNGs, cropping them to small images.
| Version | 1.1 |
|---|---|
| Bundle | anima |
| Categories | Image Processing |
| Authors | Ville Rantanen (ville.rantanen@helsinki.fi) |
| Issue tracker | View/Report issues |
| Requires | bash ; python-openslide (DEB) |
| Source files | component.xml mrxsconv.sh |
| Usage | Example with default values |
Inputs| Name | Type | Mandatory | Description |
|---|---|---|---|
| in | BinaryFolder | Mandatory | Input folder for MRXS images. Folder has one subfolder for each dataset, and a .mrxs file with the same basename. |
Outputs| Name | Type | Description |
|---|---|---|
| out | Array<ImageList> | Output folders of converted images. |
| label | Array<ImageList> | Output folders of label images. |
Parameters| Name | Type | Default | Description |
|---|---|---|---|
| level | int | 1 | Image scaling: 0=original, 1=half, 2=quarter... |
| transparent | boolean | false | Empty pixels set transparent. If false, pixels are white. |
| width | int | 1250 | Width (and height) of each output image. |
| writeAll | boolean | false | Write images without any content. |