Up: Component summary
Up: Component summary
Component
MarkerCorrelationsCombines correlating markers from the SNPMatrices. Only consecutive markers are considered to be correlating and the correlation is defined as (AA = BB) and (Aa = Bb) and (aa = bb) for all samples.
This component assumes that the markers are in the sequence order!
| Version | 1.1 |
|---|---|
| Bundle | microarray |
| Categories | Filter SNP |
| Authors | Marko Laakso (Marko.Laakso@Helsinki.FI) |
| Issue tracker | View/Report issues |
| Requires | microarray.jar (jar) |
| Source files | component.xml |
| Usage | Example with default values |
Inputs| Name | Type | Mandatory | Description |
|---|---|---|---|
| genotypes | SNPMatrix | Mandatory | SNPHelistin genotype output |
Outputs| Name | Type | Description |
|---|---|---|
| markerGroups | SetList | A table of correlating markers |
| keyMarkers | IDList | A list of input markers where each set of correlating markers is replaced with one member of the set. |
Test cases| Test case | Parameters▼ | IN genotypes |
OUT markerGroups |
OUT keyMarkers |
|---|---|---|---|---|
| case1 | (missing) | genotypes | markerGroups | keyMarkers |