Up: Component summary
Up: Component summary
Component
MaskClusterDrawReads cluster id:s, images and masks to create a colored visualization of object clustering. The coloring matches Plot2D coloring, if colorFunction="rainbow(%d)" has been used.
Example:
| Version | 1.0 |
|---|---|
| Bundle | anima |
| Categories | |
| Authors | Ville Rantanen (ville.rantanen@helsinki.fi) |
| Issue tracker | View/Report issues |
| Requires | Matlab |
| Source files | component.xml imageclusters.m execute.m |
| Usage | Example with default values |
Inputs| Name | Type | Mandatory | Description |
|---|---|---|---|
| mask | ImageList | Mandatory | A directory with BW mask image files. |
| clusters | CSV | Mandatory | A CSV file with file name, object number and cluster id number. |
| images | ImageList | Optional | A directory with image files to be overlayed on. |
| names | ImageList | Optional | A directory with image files with names used in the cluster id list. |
Outputs| Name | Type | Description |
|---|---|---|
| out | ImageList | A directory with image files. |
Parameters| Name | Type | Default | Description |
|---|---|---|---|
| alternateWidth | boolean | true | Draw even clusters with thick line. Useful if there are many clusters. Does not apply if fill is enabled |
| clusterId | string | "clusterId" | Column name of cluster ids |
| colorFunction | string | "hsv(u)" | Function used to colorify the clusters. Variable u is the number of unique clusters. Must return ux3 RGB value matrix. See http://www.mathworks.se/help/matlab/ref/colormap.html |
| fileId | string | "File" | Column name of file name |
| fill | boolean | false | Fill objects instgead of showing just the perimeter |
| leaveTrail | boolean | false | Assume data is time lapse, do not erase the old objects from previous frame. |
| objectId | string | "Object" | Column name of object number |
| useColor | boolean | true | Use colors for clusters (not much point if there are more than 1 clusters) |
Test cases| Test case | Parameters▼ | IN mask |
IN clusters |
IN images |
IN names |
OUT out |
|---|---|---|---|---|---|---|
| case1 | properties | mask | clusters | (missing) | (missing) | out |
|
clusterId=clusterId |
||||||
| case2 | properties | mask | clusters | images | (missing) | out |
|
clusterId=clusterId |
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