Up: Component summary
Up: Component summary
Component
MicroplateReaderReads multiple XLSX files generated by a fluorescence/luminescence reader for a 96 or 384 well plate and converts it into a tab-delimitted CSV file with the correct annotations for each well. See test cases for examples of input format.
| Version | 1.0 |
|---|---|
| Bundle | dsrt |
| Categories | Data Import Preprocessing Excel |
| Authors | Julia Casado (julia.casado@helsinki.fi) |
| Requires | R ; xlsx (R-package) |
| Source files | component.xml MicroplateReader.r |
| Usage | Example with default values |
Inputs| Name | Type | Mandatory | Description |
|---|---|---|---|
| in | BinaryFolder | Mandatory | Folder of XLSX files generated by the plate reader. |
| annotations | Excel | Mandatory | One XLSX file that contains the layout of the plate with annotations of what each well contains, each sheet can contain different sets of annotations, it will transform into column names of the output file. |
Outputs| Name | Type | Description |
|---|---|---|
| out | Array<CSV> | Array of CSV with the measurements from each plate. |
Test cases| Test case | Parameters▼ | IN in |
IN annotations |
OUT out |
|---|---|---|---|---|
| case1 | (missing) | in | annotations | out |