Up: Component summary
Up: Component summary
Component
PlotChannelsComponent meant to visualize Flow and Mass Cytometry data before and after transformations.
| Version | 1.0 |
|---|---|
| Bundle | flowand |
| Categories | FlowCytometry |
| Authors | Julia Casado (julia.casado@helsinki.fi) |
| Requires | R ; flowCore (R-bioconductor) |
| Source files | component.xml PlotChannels.r |
| Usage | Example with default values |
Inputs| Name | Type | Mandatory | Description |
|---|---|---|---|
| in | CSV | Mandatory | Array of FCS files |
| fs | flowSet | Mandatory | Array of FCS files |
Outputs| Name | Type | Description |
|---|---|---|
| out | BinaryFolder | Folder that contains the plots generated from the data. |
Parameters| Name | Type | Default | Description |
|---|---|---|---|
| dim1 | string | "*" | Channels to use as first dimension in plots. |
| dim2 | string | "*" | Channels to use as second dimension in plots. All the channels from dim2 will be plotted against the channels in the dim1 parameter. |
Test cases| Test case | Parameters▼ | IN in |
IN fs |
OUT out |
|---|---|---|---|---|
| case1 | (missing) | (missing) | (missing) | (missing) |