Up: Component summary
Up: Component summary
Component
PlotTreeHTMLProduces a plot of a tree (or forest) in a html page.
| Version | 1.0 |
|---|---|
| Bundle | tools |
| Categories | HTML Plot |
| Authors | Mikko Kivelä (bolozna@gmail.com) |
| Issue tracker | View/Report issues |
| Requires | Python |
| Source files | component.xml plotTreeHTML.py |
| Usage | Example with default values |
Inputs| Name | Type | Mandatory | Description |
|---|---|---|---|
| treeStructure | BinaryFile | Mandatory | The file containing merges and their heights. |
| metadata | CSV | Optional | A CSV file with data on nodes. |
| imageData | BinaryFolder | Optional | Directory containing images to be show on top of nodes. |
Outputs| Name | Type | Description |
|---|---|---|
| plot | HTML | The plot. |
Parameters| Name | Type | Default | Description |
|---|---|---|---|
| defaultNodeColor | string | "red" | The default color is used if the node color is not defined by the data. |
| defaultNodeSize | float | 4.5 | |
| maxNodeSize | float | 10 | |
| minNodeSize | float | 2 | |
| nodeColorVariables | string | "" | The list of variables that can be used for node colors. |
| nodeHeightVariables | string | "" | The list of variables that can be used for node heights. |
| nodeImageVariables | string | "" | The list of variables that can be used for node images. |
| nodeLabelVariables | string | "" | The list of variables that can be used for node labels. |
| nodeSizeVariables | string | "" | The list of variables that can be used for node size. |
| treeDataType | string | "json" | "json" or "rclusters". |
| ycoordType | string | "height" | "height" or "distance". |
Test cases| Test case | Parameters▼ | IN treeStructure |
IN metadata |
IN imageData |
OUT plot |
|
|---|---|---|---|---|---|---|
| case1_rtreeinput | properties | treeStructure | (missing) | (missing) | (missing) | |
|
treeDataType=rclusters, |
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| case2_jsoninput | properties | treeStructure | (missing) | (missing) | (missing) | |
|
nodeHeightVariables=ycoord, |
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