Up: Component summary
Up: Component summary
Component
SNPs3DSearchFetches disease associated genes from the SNPs3D database.
| Version | 1.0 |
|---|---|
| Bundle | microarray |
| Categories | Annotation |
| Authors | Sirkku Karinen (sirkku.karinen@helsinki.fi) |
| Issue tracker | View/Report issues |
| Requires | sirkku.jar (jar) |
| Source files | component.xml |
| Usage | Example with default values |
Inputs| Name | Type | Mandatory | Description |
|---|---|---|---|
| queryFeatures | CSV | Mandatory | One column list of features (with a header). |
Outputs| Name | Type | Description |
|---|---|---|
| associatedGenes | CSV | List of genes associated with the features. Output has the following columns: Feature, Gene Symbol, Band, Candidate SNPs, confidence score(SD) and Keywords |
Parameters| Name | Type | Default | Description |
|---|---|---|---|
| threshold | float | 0.0 | Least value for confidence score (SD). Results with score below the threshold are filtered out. By default, all values are accepted as the least possible score is 0. |
Test cases| Test case | Parameters▼ | IN queryFeatures |
OUT associatedGenes |
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|---|---|---|---|---|---|---|
| case1 | properties | queryFeatures | associatedGenes | |||
|
threshold = 0, |
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| case2 | properties | queryFeatures | associatedGenes | |||
|
threshold = 0.5, |
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