Up: Component summary
Up: Component summary
Component
StackProjectionProjects a grayscale z-stack to a 2D image. Use method parameter to choose the algorithm to use. Stack projection mapping is only valid for methods that pick an actual value from the stack (max,min)
| Version | 1.0 |
|---|---|
| Bundle | anima |
| Categories | Image Processing |
| Authors | Ville Rantanen (ville.rantanen@helsinki.fi) |
| Issue tracker | View/Report issues |
| Requires | Matlab |
| Source files | component.xml mapstack.m stackprojection.m |
| Usage | Example with default values |
Inputs| Name | Type | Mandatory | Description |
|---|---|---|---|
| in | ImageList | Mandatory | Folder with images (e.g. tif). The whole folder is understood as one stack. Use BFConvert to extract. Z-indexes may need to be padded with |
| toMap | Array<ImageList> | Optional | An array of directories with stacks. these stacks are projected with the same Z-indexes as found in the in port. |
Outputs| Name | Type | Description |
|---|---|---|
| out | ImageList | Projected image. |
| map | ImageList | Map of Z-indexes used. |
| mapped | Array<ImageList> | toMap projected with the map calculated for in. |
Parameters| Name | Type | Default | Description |
|---|---|---|---|
| blur | int | 0 | Blur index map before projection. Select Gaussian blur sigma. |
| dilate | int | 0 | Dilate each z-slice before projection. Select disc radius. |
| method | string | "maximum" | Projection method. maximum,mean,median,sd,minimum. |