Up: Component summary
Up: Component summary
Component
TraphTraph RNA-seq abundance estimator from Veli Mäkinen lab
| Version | 0.1 |
|---|---|
| Bundle | sequencing |
| Categories | External |
| Authors | Lauri Lyly (lauri.lyly@helsinki.fi) |
| Issue tracker | View/Report issues |
| Requires | bash |
| Source files | component.xml main.bash |
| Usage | Example with default values |
Inputs| Name | Type | Mandatory | Description |
|---|---|---|---|
| fragments | BinaryFile | Mandatory | Aligned fragments, e.g. TopHat output |
Outputs| Name | Type | Description |
|---|---|---|
| folder | BinaryFolder | Contains a GTF file. Should presumably instead produce a GTF file as output. |
Parameters| Name | Type | Default | Description |
|---|---|---|---|
| options | string | "" | Any other flags to pass to the runtraph.py command. |
| readLength | int | (no default) | Read length. Should work even if it is wrong, but results are going to be wrong as well. |