Up: Component summary
Up: Component summary
Component
UtrSeq2SeedsGenerate seeds with 15bp (XXXXXXXQXXXXXXX) with each query loci in middle. Each seed file contains seeds from each UTR sequence.
| Version | 1.0 |
|---|---|
| Bundle | sequencing |
| Categories | smallRNA |
| Authors | Ping Chen (Ping.Chen@Helsinki.FI) |
| Issue tracker | View/Report issues |
| Source files | component.xml UtrSeq2Seeds.pl |
| Usage | Example with default values |
Inputs| Name | Type | Mandatory | Description |
|---|---|---|---|
| utrseq | CSV | Mandatory | Variant calls from UTR region. |
Outputs| Name | Type | Description |
|---|---|---|
| seeds | Array<CSV> | An array of seeds. |
Test cases| Test case | Parameters▼ | IN utrseq |
OUT seeds |
|---|---|---|---|
| case1 | (missing) | utrseq | (missing) |