Up: Component summary
Up: Component summary
Component
VCMMA variant caller, from VCMM website. Most likely should be called from the VariantCaller function.
| Version | 0.1 |
|---|---|
| Bundle | sequencing |
| Categories | VariationAnalysis |
| Authors | Lauri Lyly (lauri.lyly@helsinki.fi) |
| Issue tracker | View/Report issues |
| Requires | bash |
| Source files | component.xml main.bash |
| Usage | Example with default values |
Inputs| Name | Type | Mandatory | Description |
|---|---|---|---|
| pileup | BinaryFile | Mandatory | Undocumented |
Outputs| Name | Type | Description |
|---|---|---|
| indel | CSV | Undocumented |
| snp | CSV | Undocumented |
| summary | TextFile | Undocumented |
Parameters| Name | Type | Default | Description |
|---|---|---|---|
| options | string | (no default) | Undocumented |