##fileformat=VCFv4.1
##FILTER=<ID=NC,Description="Inconsistent Genotype Submission For At Least One Sample">
##INFO=<ID=AF,Number=.,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=ASP,Number=0,Type=Flag,Description="Is Assembly specific. This is set if the variant only maps to one assembly">
##INFO=<ID=ASS,Number=0,Type=Flag,Description="In acceptor splice site FxnCode = 73">
##INFO=<ID=CDA,Number=0,Type=Flag,Description="Variation is interrogated in a clinical diagnostic assay">
##INFO=<ID=CFL,Number=0,Type=Flag,Description="Has Assembly conflict. This is for weight 1 and 2 variant that maps to different chromosomes on different assemblies.">
##INFO=<ID=CLN,Number=0,Type=Flag,Description="Variant is Clinical(LSDB,OMIM,TPA,Diagnostic)">
##INFO=<ID=DSS,Number=0,Type=Flag,Description="In donor splice-site FxnCode = 75">
##INFO=<ID=G5,Number=0,Type=Flag,Description=">5% minor allele frequency in 1+ populations">
##INFO=<ID=G5A,Number=0,Type=Flag,Description=">5% minor allele frequency in each and all populations">
##INFO=<ID=GCF,Number=0,Type=Flag,Description="Has Genotype Conflict Same (rs, ind), different genotype.  N/N is not included.">
##INFO=<ID=GENEINFO,Number=1,Type=String,Description="Pairs each of gene symbol:gene id.  The gene symbol and id are delimited by a colon (:) and each pair is delimited by a vertical bar (|)">
##INFO=<ID=GMAF,Number=1,Type=Float,Description="Global Minor Allele Frequency [0, 0.5]; global population is 1000GenomesProject phase 1 genotype data from 629 individuals, released in the 08-04-2010 dataset">
##INFO=<ID=GNO,Number=0,Type=Flag,Description="Genotypes available. The variant has individual genotype (in SubInd table).">
##INFO=<ID=HD,Number=0,Type=Flag,Description="Marker is on high density genotyping kit (50K density or greater).  The variant may have phenotype associations present in dbGaP.">
##INFO=<ID=INT,Number=0,Type=Flag,Description="In Intron FxnCode = 6">
##INFO=<ID=KGPROD,Number=0,Type=Flag,Description="1000 Genome production phase">
##INFO=<ID=KGPilot1,Number=0,Type=Flag,Description="1000 Genome discovery(pilot1) 2009">
##INFO=<ID=KGPilot123,Number=0,Type=Flag,Description="1000 Genome discovery all pilots 2010(1,2,3)">
##INFO=<ID=KGVAL,Number=0,Type=Flag,Description="1000 Genome validated by second method">
##INFO=<ID=LSD,Number=0,Type=Flag,Description="Submitted from a locus-specific database">
##INFO=<ID=MTP,Number=0,Type=Flag,Description="Microattribution/third-party annotation(TPA:GWAS,PAGE)">
##INFO=<ID=MUT,Number=0,Type=Flag,Description="Is mutation (journal citation, explicit fact): a low frequency variation that is cited in journal and other reputable sources">
##INFO=<ID=NOC,Number=0,Type=Flag,Description="Contig allele not present in variant allele list. The reference sequence allele at the mapped position is not present in the variant allele list, adjusted for orientation.">
##INFO=<ID=NOV,Number=0,Type=Flag,Description="Rs cluster has non-overlapping allele sets. True when rs set has more than 2 alleles from different submissions and these sets share no alleles in common.">
##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data">
##INFO=<ID=NSF,Number=0,Type=Flag,Description="Has non-synonymous frameshift A coding region variation where one allele in the set changes all downstream amino acids. FxnClass = 44">
##INFO=<ID=NSM,Number=0,Type=Flag,Description="Has non-synonymous missense A coding region variation where one allele in the set changes protein peptide. FxnClass = 42">
##INFO=<ID=NSN,Number=0,Type=Flag,Description="Has non-synonymous nonsense A coding region variation where one allele in the set changes to STOP codon (TER). FxnClass = 41">
##INFO=<ID=OM,Number=0,Type=Flag,Description="Has OMIM/OMIA">
##INFO=<ID=OTH,Number=0,Type=Flag,Description="Has other variant with exactly the same set of mapped positions on NCBI refernce assembly.">
##INFO=<ID=PH1,Number=0,Type=Flag,Description="Phase 1 genotyped: filtered, non-redundant">
##INFO=<ID=PH2,Number=0,Type=Flag,Description="Phase 2 genotyped: filtered, non-redundant">
##INFO=<ID=PH3,Number=0,Type=Flag,Description="Phase 3 genotyped: filtered, non-redundant">
##INFO=<ID=PM,Number=0,Type=Flag,Description="Variant is Precious(Clinical,Pubmed Cited)">
##INFO=<ID=PMC,Number=0,Type=Flag,Description="Links exist to PubMed Central article">
##INFO=<ID=R3,Number=0,Type=Flag,Description="In 3' gene region FxnCode = 13">
##INFO=<ID=R5,Number=0,Type=Flag,Description="In 5' gene region FxnCode = 15">
##INFO=<ID=REF,Number=0,Type=Flag,Description="Has reference A coding region variation where one allele in the set is identical to the reference sequence. FxnCode = 8">
##INFO=<ID=RSPOS,Number=1,Type=Integer,Description="Chr position reported in dbSNP">
##INFO=<ID=RV,Number=0,Type=Flag,Description="RS orientation is reversed">
##INFO=<ID=S3D,Number=0,Type=Flag,Description="Has 3D structure - SNP3D table">
##INFO=<ID=SAO,Number=1,Type=Integer,Description="Variant Allele Origin: 0 - unspecified, 1 - Germline, 2 - Somatic, 3 - Both">
##INFO=<ID=SCS,Number=1,Type=Integer,Description="Variant Clinical Significance, 0 - unknown, 1 - untested, 2 - non-pathogenic, 3 - probable-non-pathogenic, 4 - probable-pathogenic, 5 - pathogenic, 6 - drug-response, 7 - histocompatibility, 255 - other">
##INFO=<ID=SLO,Number=0,Type=Flag,Description="Has SubmitterLinkOut - From SNP->SubSNP->Batch.link_out">
##INFO=<ID=SSR,Number=1,Type=Integer,Description="Variant Suspect Reason Code, 0 - unspecified, 1 - Paralog, 2 - byEST, 3 - Para_EST, 4 - oldAlign, 5 - other">
##INFO=<ID=SYN,Number=0,Type=Flag,Description="Has synonymous A coding region variation where one allele in the set does not change the encoded amino acid. FxnCode = 3">
##INFO=<ID=TPA,Number=0,Type=Flag,Description="Provisional Third Party Annotation(TPA) (currently rs from PHARMGKB who will give phenotype data)">
##INFO=<ID=U3,Number=0,Type=Flag,Description="In 3' UTR Location is in an untranslated region (UTR). FxnCode = 53">
##INFO=<ID=U5,Number=0,Type=Flag,Description="In 5' UTR Location is in an untranslated region (UTR). FxnCode = 55">
##INFO=<ID=VC,Number=1,Type=String,Description="Variation Class">
##INFO=<ID=VLD,Number=0,Type=Flag,Description="Is Validated.  This bit is set if the variant has 2+ minor allele count based on frequency or genotype data.">
##INFO=<ID=VP,Number=1,Type=String,Description="Variation Property">
##INFO=<ID=WGT,Number=1,Type=Integer,Description="Weight, 00 - unmapped, 1 - weight 1, 2 - weight 2, 3 - weight 3 or more">
##INFO=<ID=WTD,Number=0,Type=Flag,Description="Is Withdrawn by submitter If one member ss is withdrawn by submitter, then this bit is set.  If all member ss' are withdrawn, then the rs is deleted to SNPHistory">
##INFO=<ID=dbSNPBuildID,Number=1,Type=Integer,Description="First dbSNP Build for RS">
##LeftAlignVariants="analysis_type=LeftAlignVariants input_file=[] read_buffer_size=null phone_home=STANDARD read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL reference_sequence=/humgen/gsa-hpprojects/GATK/bundle/current/b37/human_g1k_v37.fasta rodBind=[] nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false defaultBaseQualities=-1 validation_strictness=SILENT unsafe=null num_threads=1 read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false disable_experimental_low_memory_sharding=false logging_level=INFO log_to_file=null help=false variant=(RodBinding name=variant source=00-All.vcf) out=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub NO_HEADER=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub filter_mismatching_base_and_quals=false"
##SelectVariants="analysis_type=SelectVariants input_file=[] read_buffer_size=null phone_home=STANDARD gatk_key=null read_filter=[] intervals=[1:40000-100000] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL reference_sequence=/mnt/csc-cloud/resources/gatk-1.5/b37/human_g1k_v37.fasta rodBind=[] nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false BQSR=null defaultBaseQualities=-1 validation_strictness=SILENT unsafe=null num_threads=1 num_cpu_threads=null num_io_threads=null num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false logging_level=INFO log_to_file=null help=false variant=(RodBinding name=variant source=/mnt/csc-cloud/resources/gatk-1.5/b37/dbsnp_135.b37.vcf) discordance=(RodBinding name= source=UNBOUND) concordance=(RodBinding name= source=UNBOUND) out=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub NO_HEADER=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sample_name=[] sample_expressions=null sample_file=null exclude_sample_name=[] exclude_sample_file=[] select_expressions=[] excludeNonVariants=false excludeFiltered=false restrictAllelesTo=ALL keepOriginalAC=false mendelianViolation=false mendelianViolationQualThreshold=0.0 select_random_number=0 select_random_fraction=0.0 remove_fraction_genotypes=0.0 selectTypeToInclude=[] keepIDs=null outMVFile=null filter_mismatching_base_and_quals=false"
##contig=<ID=1,length=100000,assembly=b37>
##dbSNP_BUILD_ID=135
##fileDate=20111104
##phasing=partial
##reference=GRCh37.3
##reference=file:///mnt/csc-cloud/resources/gatk-1.5/b37/human_g1k_v37.fasta
##source=SelectVariants
##source=dbSNP
##variationPropertyDocumentationUrl=ftp://ftp.ncbi.nlm.nih.gov/snp/specs/dbSNP_BitField_latest.pdf	
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	
1	51476	rs187298206	T	C	.	PASS	KGPilot123;RSPOS=51476;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	51479	rs116400033	T	A	.	PASS	ASP;G5;G5A;GMAF=0.113802559414991;KGPilot123;RSPOS=51479;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000004070010000100;WGT=0;dbSNPBuildID=132
1	51803	rs62637812	T	C	.	PASS	GMAF=0.468921389396709;RSPOS=51803;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000000040000000100;WGT=0;dbSNPBuildID=129
1	51898	rs76402894	C	A	.	PASS	GMAF=0.0731261425959781;GNO;RSPOS=51898;SAO=0;SSR=0;VC=SNV;VP=050000000000000100000100;WGT=0;dbSNPBuildID=131
1	51914	rs190452223	T	G	.	PASS	KGPilot123;RSPOS=51914;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	51928	rs78732933	G	A	.	PASS	GNO;RSPOS=51928;SAO=0;SSR=0;VC=SNV;VP=050000000000000100000100;WGT=0;dbSNPBuildID=131
1	51935	rs181754315	C	T	.	PASS	KGPilot123;RSPOS=51935;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	51954	rs185832753	G	C	.	PASS	KGPilot123;RSPOS=51954;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	52058	rs62637813	G	C	.	PASS	GMAF=0.0342778793418647;KGPilot123;RSPOS=52058;SAO=0;SSR=1;VC=SNV;VLD;VP=050000000000040010000140;WGT=0;dbSNPBuildID=129
1	52144	rs190291950	T	A	.	PASS	KGPilot123;RSPOS=52144;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	52238	rs150021059	T	G	.	PASS	ASP;KGPilot123;RSPOS=52238;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	54353	rs140052487	C	A	.	PASS	ASP;KGPilot123;RSPOS=54353;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	54421	rs146477069	A	G	.	PASS	ASP;KGPilot123;RSPOS=54421;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	54490	rs141149254	G	A	.	PASS	ASP;KGPilot123;RSPOS=54490;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	54676	rs2462492	C	T	.	PASS	ASP;GMAF=0.191956124314442;GNO;HD;KGPilot123;RSPOS=54676;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000004040510000100;WGT=0;dbSNPBuildID=100
1	54753	rs143174675	T	G	.	PASS	ASP;KGPilot123;RSPOS=54753;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	54788	rs59861892	CC	C,CCT	.	PASS	ASP;RSPOS=54789;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=129
1	54795	rs58014817	T	A	.	PASS	ASP;RSPOS=54795;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=129
1	55164	rs3091274	C	A	.	PASS	G5;G5A;GMAF=0.145338208409506;GNO;KGPilot123;RSPOS=55164;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000000030110000100;WGT=0;dbSNPBuildID=103
1	55299	rs10399749	C	T	.	PASS	G5;G5A;GMAF=0.278793418647166;GNO;KGPilot123;PH2;RSPOS=55299;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000000030112000100;WGT=0;dbSNPBuildID=119
1	55302	rs3091273	C	T	.	PASS	RSPOS=55302;SAO=0;SSR=0;VC=SNV;VP=050000000000000000000100;WGT=0;dbSNPBuildID=103
1	55313	rs182462964	A	T	.	PASS	KGPilot123;RSPOS=55313;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	55322	rs3107974	C	T	.	PASS	RSPOS=55322;SAO=0;SSR=0;VC=SNV;VP=050000000000000000000100;WGT=0;dbSNPBuildID=103
1	55326	rs3107975	T	C	.	PASS	GNO;HD;KGPilot123;RSPOS=55326;SAO=0;SSR=0;VC=SNV;VP=050000000000000510000100;WGT=0;dbSNPBuildID=103
1	55330	rs185215913	G	A	.	PASS	KGPilot123;RSPOS=55330;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	55367	rs190850374	G	A	.	PASS	KGPilot123;RSPOS=55367;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	55388	rs182711216	C	T	.	PASS	KGPilot123;RSPOS=55388;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	55394	rs2949420	T	A	.	PASS	GNO;KGPilot123;PH2;RSPOS=55394;SAO=0;SSR=0;VC=SNV;VP=050000000000000112000100;WGT=0;dbSNPBuildID=101
1	55416	rs193242050	G	A	.	PASS	KGPilot123;RSPOS=55416;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	55427	rs183189405	T	C	.	PASS	KGPilot123;RSPOS=55427;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	55545	rs28396308	C	T	.	PASS	GNO;RSPOS=55545;SAO=0;SSR=0;VC=SNV;VP=050000000000000100000100;WGT=0;dbSNPBuildID=125
1	55816	rs187434873	G	A	.	PASS	KGPilot123;RSPOS=55816;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	55850	rs191890754	C	G	.	PASS	KGPilot123;RSPOS=55850;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	55852	rs184233019	G	C	.	PASS	KGPilot123;RSPOS=55852;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	56644	rs143342222	A	C	.	PASS	ASP;KGPilot123;RSPOS=56644;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	57952	rs189727433	A	C	.	PASS	KGPilot123;RSPOS=57952;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	58771	rs140128481	T	C	.	PASS	ASP;RSPOS=58771;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=134
1	58814	rs114420996	G	A	.	PASS	ASP;G5;GMAF=0.0982632541133455;KGPilot123;RSPOS=58814;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000004050010000100;WGT=0;dbSNPBuildID=132
1	59040	rs149755937	T	C	.	PASS	ASP;KGPilot123;RSPOS=59040;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	60718	rs78395614	G	A	.	PASS	CFL;GNO;RSPOS=60718;SAO=0;SSR=0;VC=SNV;VP=050000000008000100000100;WGT=0;dbSNPBuildID=131
1	60726	rs192328835	C	A	.	PASS	KGPilot123;RSPOS=60726;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	60791	rs76199781	A	G	.	PASS	CFL;GNO;RSPOS=60791;SAO=0;SSR=0;VC=SNV;VP=050000000008000100000100;WGT=0;dbSNPBuildID=131
1	61442	rs74970982	A	G	.	PASS	CFL;GMAF=0.076782449725777;GNO;KGPilot123;RSPOS=61442;SAO=0;SSR=0;VC=SNV;VP=050000000008000110000100;WGT=0;dbSNPBuildID=131
1	61462	rs56992750	T	A	.	PASS	CFL;G5;G5A;GMAF=0.0383912248628885;GNO;KGPilot123;RSPOS=61462;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000008030110000100;WGT=0;dbSNPBuildID=129
1	61480	rs75526266	G	C	.	PASS	CFL;GNO;RSPOS=61480;SAO=0;SSR=0;VC=SNV;VP=050000000008000100000100;WGT=0;dbSNPBuildID=131
1	61499	rs75719746	G	A	.	PASS	CFL;GNO;RSPOS=61499;SAO=0;SSR=0;VC=SNV;VP=050000000008000100000100;WGT=0;dbSNPBuildID=131
1	61743	rs184286948	G	C	.	PASS	KGPilot123;RSPOS=61743;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	61920	rs62637820	G	A	.	PASS	CFL;GMAF=0.0255941499085923;RSPOS=61920;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000008040000000100;WGT=0;dbSNPBuildID=129
1	61987	rs76735897	A	G	.	PASS	CFL;GMAF=0.292961608775137;GNO;KGPilot123;RSPOS=61987;SAO=0;SSR=0;VC=SNV;VP=050000000008000110000100;WGT=0;dbSNPBuildID=131
1	61989	rs77573425	G	C	.	PASS	CFL;GMAF=0.309414990859232;GNO;KGPilot123;RSPOS=61989;SAO=0;SSR=0;VC=SNV;VP=050000000008000110000100;WGT=0;dbSNPBuildID=131
1	61993	rs190553843	C	T	.	PASS	KGPilot123;RSPOS=61993;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	62156	rs181864839	C	T	.	PASS	KGPilot123;RSPOS=62156;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	62157	rs10399597	G	A	.	PASS	CFL;GMAF=0.00228519195612431;KGPilot123;RSPOS=62157;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000008040010000100;WGT=0;dbSNPBuildID=119
1	62162	rs140556834	G	A	.	PASS	ASP;KGPilot123;RSPOS=62162;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	62203	rs28402963	T	C	.	PASS	CFL;KGPilot123;RSPOS=62203;SAO=0;SSR=0;VC=SNV;VP=050000000008000010000100;WGT=0;dbSNPBuildID=125
1	62271	rs28599927	A	G	.	PASS	CFL;GMAF=0.138482632541133;RSPOS=62271;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000008040000000100;WGT=0;dbSNPBuildID=125
1	63268	rs75478250	T	C	.	PASS	CFL;GNO;RSPOS=63268;SAO=0;SSR=0;VC=SNV;VP=050000000008000100000100;WGT=0;dbSNPBuildID=131
1	63276	rs185977555	G	A	.	PASS	KGPilot123;RSPOS=63276;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	63297	rs188886746	G	A	.	PASS	KGPilot123;RSPOS=63297;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	63671	rs116440577	G	A	.	PASS	ASP;G5;GMAF=0.170018281535649;KGPilot123;RSPOS=63671;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000004050010000100;WGT=0;dbSNPBuildID=132
1	63737	rs77426996	TACT	T,TCTA	.	PASS	CFL;RSPOS=63738;SAO=0;SSR=0;VC=DIV;VP=050000000008000000000200;WGT=0;dbSNPBuildID=131
1	64649	rs181431124	A	C	.	PASS	KGPilot123;RSPOS=64649;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	66008	rs2691286	C	G	.	PASS	CFL;GNO;RSPOS=66008;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000008000100000100;WGT=0;dbSNPBuildID=100
1	66162	rs62639105	A	T	.	PASS	CFL;GMAF=0.320383912248629;GNO;KGPilot123;RSPOS=66162;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000008000110000100;WGT=0;dbSNPBuildID=129
1	66176	rs28552463	T	A	.	PASS	CFL;GMAF=0.0484460694698355;KGPilot123;RSPOS=66176;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000008040010000100;WGT=0;dbSNPBuildID=125
1	66219	rs181028663	A	T	.	PASS	KGPilot123;RSPOS=66219;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	66238	rs113961546	T	A	.	PASS	CFL;GNO;RSPOS=66238;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000008000100000100;WGT=0;dbSNPBuildID=132
1	66314	rs28534012	T	A	.	PASS	CFL;RSPOS=66314;SAO=0;SSR=0;VC=SNV;VP=050000000008000000000100;WGT=0;dbSNPBuildID=125
1	66331	rs186063952	A	C	.	PASS	KGPilot123;RSPOS=66331;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	66334	rs28464214	T	A	.	PASS	CFL;RSPOS=66334;SAO=0;SSR=0;VC=SNV;VP=050000000008000000000100;WGT=0;dbSNPBuildID=125
1	66442	rs192044252	T	A	.	PASS	KGPilot123;RSPOS=66442;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	66457	rs13328655	T	A	.	PASS	CFL;GMAF=0.0795246800731261;KGPilot123;RSPOS=66457;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000008040010000100;WGT=0;dbSNPBuildID=121
1	66503	rs112350669	T	A	.	PASS	CFL;RSPOS=66503;SAO=0;SSR=0;VC=SNV;VP=050000000008000000000100;WGT=0;dbSNPBuildID=132
1	66507	rs12401368	T	A	.	PASS	CFL;GMAF=0.479890310786106;KGPilot123;RSPOS=66507;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000008040010000100;WGT=0;dbSNPBuildID=120
1	66651	rs2257270	A	T	.	PASS	CFL;GNO;RSPOS=66651;SAO=0;SSR=0;VC=SNV;VP=050000000008000100000100;WGT=0;dbSNPBuildID=100
1	67179	rs149952626	C	G	.	PASS	ASP;KGPilot123;RSPOS=67179;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	67181	rs77662731	A	G	.	PASS	ASP;G5;G5A;GENEINFO=OR4F5:79501;GMAF=0.0470749542961609;GNO;KGPilot123;RSPOS=67181;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000004070110000100;WGT=0;dbSNPBuildID=131
1	67223	rs78676975	C	A	.	PASS	ASP;GENEINFO=OR4F5:79501;GNO;RSPOS=67223;SAO=0;SSR=0;VC=SNV;VP=050000000004000100000100;WGT=0;dbSNPBuildID=131
1	69428	rs140739101	T	G	.	PASS	ASP;RSPOS=69428;S3D;SAO=0;SSR=0;VC=SNV;VLD;VP=050200000004040000000100;WGT=0;dbSNPBuildID=134
1	69453	rs142004627	G	A	.	PASS	ASP;RSPOS=69453;S3D;SAO=0;SSR=0;VC=SNV;VP=050200000004000000000100;WGT=0;dbSNPBuildID=134
1	69476	rs148502021	T	C	.	PASS	ASP;RSPOS=69476;S3D;SAO=0;SSR=0;VC=SNV;VLD;VP=050200000004040000000100;WGT=0;dbSNPBuildID=134
1	69496	rs150690004	G	A	.	PASS	ASP;RSPOS=69496;S3D;SAO=0;SSR=0;VC=SNV;VLD;VP=050200000004040000000100;WGT=0;dbSNPBuildID=134
1	69511	rs75062661	A	G	.	PASS	GENEINFO=OR4F5:79501;GMAF=0.193784277879342;GNO;KGPilot123;RSPOS=69511;S3D;SAO=0;SSR=0;VC=SNV;VP=050200000000000110000100;WGT=0;dbSNPBuildID=131
1	69534	rs190717287	T	C	.	PASS	KGPilot123;RSPOS=69534;S3D;SAO=0;SSR=0;VC=SNV;VP=050200000000000010000100;WGT=0;dbSNPBuildID=135
1	69552	rs55874132	G	C	.	PASS	GENEINFO=OR4F5:79501;HD;RSPOS=69552;S3D;SAO=0;SLO;SSR=0;VC=SNV;VLD;VP=050300000000040400000100;WGT=0;dbSNPBuildID=129
1	69590	rs141776804	T	A	.	PASS	ASP;RSPOS=69590;S3D;SAO=0;SSR=0;VC=SNV;VP=050200000004000000000100;WGT=0;dbSNPBuildID=134
1	69594	rs144967600	T	C	.	PASS	ASP;RSPOS=69594;S3D;SAO=0;SSR=0;VC=SNV;VP=050200000004000000000100;WGT=0;dbSNPBuildID=134
1	72148	rs182862337	C	T	.	PASS	KGPilot123;RSPOS=72148;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	73841	rs143773730	C	T	.	PASS	ASP;KGPilot123;RSPOS=73841;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	74651	rs62641291	G	A	.	PASS	RSPOS=74651;SAO=0;SSR=0;VC=SNV;VP=050000000000000000000100;WGT=0;dbSNPBuildID=129
1	74681	rs13328683	G	T	.	PASS	CFL;GMAF=0.286106032906764;RSPOS=74681;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000008040000000100;WGT=0;dbSNPBuildID=121
1	74709	rs62641292	T	A	.	PASS	CFL;RSPOS=74709;SAO=0;SSR=0;VC=SNV;VP=050000000008000000000100;WGT=0;dbSNPBuildID=129
1	74771	rs13328675	A	G	.	PASS	CFL;RSPOS=74771;SAO=0;SSR=0;VC=SNV;VP=050000000008000000000100;WGT=0;dbSNPBuildID=121
1	74790	rs13328700	C	G	.	PASS	CFL;RSPOS=74790;SAO=0;SSR=0;VC=SNV;VP=050000000008000000000100;WGT=0;dbSNPBuildID=121
1	74792	rs13328684	G	A	.	PASS	CFL;RSPOS=74792;SAO=0;SSR=0;VC=SNV;VP=050000000008000000000100;WGT=0;dbSNPBuildID=121
1	77462	rs188023513	G	A	.	PASS	KGPilot123;RSPOS=77462;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	77470	rs192898053	T	C	.	PASS	KGPilot123;RSPOS=77470;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	77874	rs184538873	G	A	.	PASS	KGPilot123;RSPOS=77874;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	77961	rs78385339	G	A	.	PASS	GMAF=0.125685557586837;KGPilot123;RSPOS=77961;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000000040010000100;WGT=0;dbSNPBuildID=131
1	79033	rs62641298	A	G	.	PASS	GMAF=0.438299817184644;GNO;HD;KGPilot123;RSPOS=79033;SAO=0;SSR=0;VC=SNV;VP=050000000000000510000100;WGT=0;dbSNPBuildID=129
1	79050	rs62641299	G	T	.	PASS	GMAF=0.224405850091408;GNO;KGPilot123;RSPOS=79050;SAO=0;SSR=0;VC=SNV;VP=050000000000000110000100;WGT=0;dbSNPBuildID=129
1	79137	rs143777184	A	T	.	PASS	ASP;KGPilot123;RSPOS=79137;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	79417	rs184768190	C	T	.	PASS	KGPilot123;RSPOS=79417;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	79418	rs2691296	G	C	.	PASS	GMAF=0.0178244972577697;RSPOS=79418;RV;SAO=0;SLO;SSR=0;VC=SNV;VLD;VP=050100000000040000000100;WGT=0;dbSNPBuildID=100
1	79538	rs2691295	C	T	.	PASS	RSPOS=79538;RV;SAO=0;SSR=0;VC=SNV;VP=050000000000000000000100;WGT=0;dbSNPBuildID=100
1	79772	rs147215883	C	G	.	PASS	ASP;KGPilot123;RSPOS=79772;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	79872	rs189224661	T	G	.	PASS	KGPilot123;RSPOS=79872;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	80323	rs3942603	G	C	.	PASS	CFL;GNO;RSPOS=80323;RV;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000008000100000100;WGT=0;dbSNPBuildID=108
1	80386	rs3878915	C	A	.	PASS	GMAF=0.0118829981718464;RSPOS=80386;RV;SAO=0;SLO;SSR=0;VC=SNV;VLD;VP=050100000000040000000100;WGT=0;dbSNPBuildID=108
1	80454	rs144226842	G	C	.	PASS	ASP;KGPilot123;RSPOS=80454;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	81836	rs2259560	A	T	.	PASS	ASP;GNO;RSPOS=81836;RV;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000004000100000100;WGT=0;dbSNPBuildID=100
1	81949	rs181567186	T	C	.	PASS	KGPilot123;RSPOS=81949;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	81962	rs4030308	T	TAA	.	PASS	ASP;RSPOS=81962;RV;SAO=0;SLO;SSR=0;VC=DIV;VP=050100000004000000000200;WGT=0;dbSNPBuildID=108
1	82102	rs4030307	C	T	.	PASS	ASP;RSPOS=82102;RV;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000004000000000100;WGT=0;dbSNPBuildID=108
1	82103	rs2020400	T	C	.	PASS	ASP;RSPOS=82103;RV;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000004000000000100;WGT=0;dbSNPBuildID=92
1	82126	rs1815133	C	T	.	PASS	ASP;RSPOS=82126;RV;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000004000000000100;WGT=0;dbSNPBuildID=92
1	82133	rs4030306	CA	C,CAAAAAAAAAAAAAAA	.	PASS	ASP;RSPOS=82136;RV;SAO=0;SLO;SSR=0;VC=DIV;VP=050100000004000000000200;WGT=0;dbSNPBuildID=108
1	82154	rs4477212	A	G	.	PASS	ASP;HD;RSPOS=82154;SAO=0;SSR=0;VC=SNV;VP=050000000004000400000100;WGT=0;dbSNPBuildID=111
1	82162	rs1815132	C	A	.	PASS	ASP;GMAF=0.0351919561243144;GNO;RSPOS=82162;RV;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000004000100000100;WGT=0;dbSNPBuildID=92
1	82163	rs139113303	G	A	.	PASS	ASP;KGPilot123;RSPOS=82163;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	82196	rs112844054	A	T	.	PASS	ASP;RSPOS=82196;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=132
1	82249	rs1851945	A	G	.	PASS	ASP;GMAF=0.0452468007312614;KGPilot123;RSPOS=82249;RV;SAO=0;SLO;SSR=0;VC=SNV;VLD;VP=050100000004040010000100;WGT=0;dbSNPBuildID=92
1	82282	rs3871775	G	A	.	PASS	ASP;RSPOS=82282;RV;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000004000000000100;WGT=0;dbSNPBuildID=108
1	82303	rs3871776	T	C	.	PASS	ASP;RSPOS=82303;RV;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000004000000000100;WGT=0;dbSNPBuildID=108
1	82316	rs4030305	A	C	.	PASS	ASP;GNO;RSPOS=82316;RV;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000004000100000100;WGT=0;dbSNPBuildID=108
1	82609	rs149189449	C	G	.	PASS	ASP;KGPilot123;RSPOS=82609;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	82676	rs185237834	T	G	.	PASS	KGPilot123;RSPOS=82676;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	82734	rs4030331	T	C	.	PASS	ASP;GMAF=0.261882998171846;KGPilot123;RSPOS=82734;RV;SAO=0;SLO;SSR=0;VC=SNV;VLD;VP=050100000004040010000100;WGT=0;dbSNPBuildID=108
1	82957	rs189774606	C	T	.	PASS	KGPilot123;RSPOS=82957;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	83084	rs181193408	T	A	.	PASS	KGPilot123;RSPOS=83084;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	83088	rs186081601	G	C	.	PASS	KGPilot123;RSPOS=83088;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	83107	rs4405097	G	C	.	PASS	ASP;RSPOS=83107;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=111
1	83119	rs4030324	AA	A,ATAAC	.	PASS	ASP;RSPOS=83120;RV;SAO=0;SLO;SSR=0;VC=DIV;VP=050100000004000000000200;WGT=0;dbSNPBuildID=108
1	83771	rs189906733	T	G	.	PASS	KGPilot123;RSPOS=83771;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	83786	rs58520670	T	TA	.	PASS	ASP;RSPOS=83794;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=129
1	83815	rs58857344	GAGAA	G	.	PASS	ASP;RSPOS=83827;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=129
1	83826	rs71281475	AAAGA	A,AAA	.	PASS	ASP;GNO;RSPOS=83827;RV;SAO=0;SLO;SSR=0;VC=DIV;VP=050100000004000100000200;WGT=0;dbSNPBuildID=130
1	83855	rs59596480	GAA	G	.	PASS	ASP;RSPOS=83857;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=129
1	83872	rs59556914	AA	A,AAGA	.	PASS	ASP;RSPOS=83873;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=129
1	83884	rs59586754	GAAA	G	.	PASS	ASP;RSPOS=83885;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=129
1	83897	rs61330047	GAA	G	.	PASS	ASP;RSPOS=83899;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=129
1	83901	rs58254183	GAAAGAA	G	.	PASS	ASP;RSPOS=83903;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=129
1	83921	rs61338823	GAA	G	.	PASS	ASP;RSPOS=83923;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=129
1	83930	rs71281474	AG	A,AGA	.	PASS	ASP;GNO;RSPOS=83931;RV;SAO=0;SLO;SSR=0;VC=DIV;VP=050100000004000100000200;WGT=0;dbSNPBuildID=130
1	83934	rs59235392	AG	A,AGAAA	.	PASS	ASP;RSPOS=83935;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=129
1	83977	rs180759811	A	G	.	PASS	KGPilot123;RSPOS=83977;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	84002	rs28850140	G	A	.	PASS	ASP;GMAF=0.138939670932358;KGPilot123;RSPOS=84002;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000004040010000100;WGT=0;dbSNPBuildID=125
1	84010	rs186443818	G	A	.	PASS	KGPilot123;RSPOS=84010;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	84018	rs61352176	GAA	G	.	PASS	ASP;RSPOS=84020;SAO=0;SSR=0;VC=DIV;VP=050000000004000000000200;WGT=0;dbSNPBuildID=129
1	84079	rs190867312	T	C	.	PASS	KGPilot123;RSPOS=84079;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	84139	rs183605470	A	T	.	PASS	KGPilot123;RSPOS=84139;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	84156	rs188652299	A	C	.	PASS	KGPilot123;RSPOS=84156;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	84244	rs191297051	A	C	.	PASS	KGPilot123;RSPOS=84244;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	84295	rs183209871	G	A	.	PASS	KGPilot123;RSPOS=84295;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	84346	rs187855973	T	C	.	PASS	KGPilot123;RSPOS=84346;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	84453	rs191379015	C	G	.	PASS	KGPilot123;RSPOS=84453;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	84705	rs183470350	T	G	.	PASS	KGPilot123;RSPOS=84705;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	85063	rs187802690	T	C	.	PASS	KGPilot123;RSPOS=85063;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	85200	rs4030343	T	C	.	PASS	ASP;GMAF=0.0680987202925046;RSPOS=85200;RV;SAO=0;SLO;SSR=0;VC=SNV;VLD;VP=050100000004040000000100;WGT=0;dbSNPBuildID=108
1	85302	rs4030342	A	G	.	PASS	ASP;RSPOS=85302;RV;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000004000000000100;WGT=0;dbSNPBuildID=108
1	85420	rs4030341	T	G	.	PASS	ASP;GMAF=1;GNO;RSPOS=85420;RV;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000004000100000100;WGT=0;dbSNPBuildID=108
1	85526	rs111645077	A	C	.	PASS	ASP;RSPOS=85526;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=132
1	85597	rs192472955	A	C	.	PASS	KGPilot123;RSPOS=85597;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	85622	rs185273034	A	T	.	PASS	KGPilot123;RSPOS=85622;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	85892	rs147185795	A	G	.	PASS	ASP;KGPilot123;RSPOS=85892;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	86000	rs140628094	A	C	.	PASS	ASP;KGPilot123;RSPOS=86000;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	86018	rs142878000	C	G	.	PASS	ASP;KGPilot123;RSPOS=86018;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	86028	rs114608975	T	C	.	PASS	ASP;G5;G5A;GMAF=0.0310786106032907;KGPilot123;RSPOS=86028;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000004070010000100;WGT=0;dbSNPBuildID=132
1	86064	rs190167736	G	A	.	PASS	KGPilot123;RSPOS=86064;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	86065	rs116504101	G	C	.	PASS	ASP;G5;G5A;GMAF=0.0315356489945155;KGPilot123;RSPOS=86065;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000004070010000100;WGT=0;dbSNPBuildID=132
1	86235	rs111577602	A	C	.	PASS	ASP;RSPOS=86235;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=132
1	86282	rs192830046	T	G	.	PASS	KGPilot123;RSPOS=86282;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	86303	rs2949417	G	T	.	PASS	ASP;GMAF=0.129798903107861;KGPilot123;RSPOS=86303;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000004040010000100;WGT=0;dbSNPBuildID=101
1	86331	rs115209712	A	G	.	PASS	ASP;G5;G5A;GMAF=0.126142595978062;KGPilot123;RSPOS=86331;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000004070010000100;WGT=0;dbSNPBuildID=132
1	86982	rs184970101	G	A	.	PASS	KGPilot123;RSPOS=86982;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	87021	rs188486692	T	C	.	PASS	KGPilot123;RSPOS=87021;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	87099	rs74807217	T	A	.	PASS	ASP;GNO;RSPOS=87099;SAO=0;SSR=0;VC=SNV;VP=050000000004000100000100;WGT=0;dbSNPBuildID=131
1	87109	rs112601681	T	C	.	PASS	ASP;RSPOS=87109;SAO=0;SSR=0;VC=SNV;VP=050000000004000000000100;WGT=0;dbSNPBuildID=132
1	87190	rs1524602	G	A	.	PASS	ASP;G5;G5A;GMAF=0.281078610603291;GNO;KGPilot123;RSPOS=87190;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000004030110000100;WGT=0;dbSNPBuildID=88
1	87276	rs5772017	A	AT	.	PASS	CFL;PM;PMC;RSPOS=87285;SAO=0;SSR=0;VC=DIV;VP=050028000008000000000200;WGT=0;dbSNPBuildID=114
1	87303	rs113433457	G	A	.	PASS	CFL;GNO;RSPOS=87303;SAO=0;SSR=0;VC=SNV;VP=050000000008000100000100;WGT=0;dbSNPBuildID=132
1	87360	rs180907504	C	T	.	PASS	KGPilot123;RSPOS=87360;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	87409	rs139490478	C	T	.	PASS	ASP;KGPilot123;RSPOS=87409;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	87590	rs185279164	G	A	.	PASS	KGPilot123;RSPOS=87590;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	87647	rs146836579	T	C	.	PASS	ASP;KGPilot123;RSPOS=87647;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	87683	rs113097605	T	C	.	PASS	CFL;GNO;RSPOS=87683;SAO=0;SSR=0;VC=SNV;VP=050000000008000100000100;WGT=0;dbSNPBuildID=132
1	87702	rs111305205	G	A	.	PASS	CFL;GNO;RSPOS=87702;SAO=0;SSR=0;VC=SNV;VP=050000000008000100000100;WGT=0;dbSNPBuildID=132
1	87755	rs140735660	G	A	.	PASS	ASP;KGPilot123;RSPOS=87755;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	87826	rs3855952	A	G	.	PASS	CFL;GNO;PH2;RSPOS=87826;RV;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000008000102000100;WGT=0;dbSNPBuildID=108
1	87970	rs189643077	T	C	.	PASS	KGPilot123;RSPOS=87970;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	87978	rs182297743	G	A	.	PASS	KGPilot123;RSPOS=87978;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	88136	rs59529791	G	A	.	PASS	CFL;KGPilot123;RSPOS=88136;SAO=0;SSR=0;VC=SNV;VP=050000000008000010000100;WGT=0;dbSNPBuildID=129
1	88169	rs940550	C	T	.	PASS	CFL;G5;GMAF=0.25091407678245;GNO;KGPilot123;PH2;RSPOS=88169;SAO=0;SLO;SSR=0;VC=SNV;VLD;VP=050100000008050112000100;WGT=0;dbSNPBuildID=86
1	88172	rs940551	G	A	.	PASS	CFL;G5;G5A;GMAF=0.030164533820841;KGPilot123;RSPOS=88172;SAO=0;SLO;SSR=0;VC=SNV;VLD;VP=050100000008070010000100;WGT=0;dbSNPBuildID=86
1	88177	rs143215837	G	C	.	PASS	ASP;KGPilot123;RSPOS=88177;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	88188	rs148331237	C	A	.	PASS	ASP;KGPilot123;RSPOS=88188;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	88216	rs2103136	A	G	.	PASS	CFL;GNO;HD;RSPOS=88216;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000008000500000100;WGT=0;dbSNPBuildID=96
1	88236	rs186918018	C	T	.	PASS	KGPilot123;RSPOS=88236;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	88250	rs191950833	T	A	.	PASS	KGPilot123;RSPOS=88250;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	88265	rs940552	C	T	.	PASS	CFL;G5;GNO;RSPOS=88265;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000008010100000100;WGT=0;dbSNPBuildID=86
1	88295	rs113378454	T	A	.	PASS	CFL;GNO;RSPOS=88295;SAO=0;SSR=0;VC=SNV;VP=050000000008000100000100;WGT=0;dbSNPBuildID=132
1	88316	rs113759966	G	A	.	PASS	CFL;GMAF=0.033363802559415;GNO;KGPilot123;RSPOS=88316;SAO=0;SSR=0;VC=SNV;VP=050000000008000110000100;WGT=0;dbSNPBuildID=132
1	88324	rs183326616	A	G	.	PASS	KGPilot123;RSPOS=88324;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	88332	rs113199939	A	C	.	PASS	CFL;GNO;RSPOS=88332;SAO=0;SSR=0;VC=SNV;VP=050000000008000100000100;WGT=0;dbSNPBuildID=132
1	88338	rs55700207	G	A	.	PASS	CFL;G5;GMAF=0.0836380255941499;GNO;KGPilot123;RSPOS=88338;SAO=0;SSR=0;VC=SNV;VP=050000000008010110000100;WGT=0;dbSNPBuildID=129
1	88370	rs185487977	G	A	.	PASS	KGPilot123;RSPOS=88370;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	88376	rs189954431	T	G	.	PASS	KGPilot123;RSPOS=88376;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	88388	rs182344336	C	T	.	PASS	KGPilot123;RSPOS=88388;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	88429	rs146027550	T	C	.	PASS	ASP;KGPilot123;RSPOS=88429;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	88710	rs186575039	C	G	.	PASS	KGPilot123;RSPOS=88710;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	89165	rs192631277	A	C	.	PASS	KGPilot123;RSPOS=89165;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	89744	rs184101761	A	G	.	PASS	KGPilot123;RSPOS=89744;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	89794	rs188661839	T	C	.	PASS	KGPilot123;RSPOS=89794;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	89946	rs138808727	A	T	.	PASS	ASP;KGPilot123;RSPOS=89946;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	90199	rs78751575	A	T	.	PASS	CFL;GMAF=0.0447897623400366;GNO;RSPOS=90199;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000008040100000100;WGT=0;dbSNPBuildID=131
1	90238	rs74728256	A	C	.	PASS	CFL;GNO;RSPOS=90238;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000008040100000100;WGT=0;dbSNPBuildID=131
1	90311	rs76894051	T	C	.	PASS	CFL;GNO;RSPOS=90311;SAO=0;SSR=0;VC=SNV;VP=050000000008000100000100;WGT=0;dbSNPBuildID=131
1	91190	rs143856811	G	A	.	PASS	ASP;KGPilot123;RSPOS=91190;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	91228	rs139873689	A	G	.	PASS	ASP;KGPilot123;RSPOS=91228;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	91336	rs4245763	A	T	.	PASS	CFL;GNO;RSPOS=91336;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000008000100000100;WGT=0;dbSNPBuildID=111
1	91354	rs4245764	G	A	.	PASS	CFL;GMAF=0.00959780621572212;GNO;RSPOS=91354;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000008000100000100;WGT=0;dbSNPBuildID=111
1	91421	rs28619159	T	C	.	PASS	CFL;GMAF=0.0557586837294333;GNO;RSPOS=91421;SAO=0;SSR=0;VC=SNV;VP=050000000008000100000100;WGT=0;dbSNPBuildID=125
1	91472	rs6680825	C	T	.	PASS	CFL;GMAF=0.00959780621572212;RSPOS=91472;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000008040000000100;WGT=0;dbSNPBuildID=116
1	91486	rs28555135	G	C	.	PASS	CFL;RSPOS=91486;SAO=0;SSR=0;VC=SNV;VP=050000000008000000000100;WGT=0;dbSNPBuildID=125
1	91490	rs28662916	A	G	.	PASS	CFL;RSPOS=91490;SAO=0;SSR=1;VC=SNV;VP=050000000008000000000140;WGT=0;dbSNPBuildID=125
1	91536	rs77418980	G	T	.	PASS	CFL;G5;G5A;GMAF=0.338665447897623;HD;KGPilot123;RSPOS=91536;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000008070410000100;WGT=0;dbSNPBuildID=131
1	91551	rs61483841	G	GT	.	PASS	CFL;RSPOS=91560;SAO=0;SSR=0;VC=DIV;VP=050000000008000000000200;WGT=0;dbSNPBuildID=129
1	91581	rs151118460	G	A	.	PASS	ASP;KGPilot123;RSPOS=91581;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	91605	rs141083882	C	T	.	PASS	ASP;KGPilot123;RSPOS=91605;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	92593	rs75476593	C	G	.	PASS	CFL;GNO;RSPOS=92593;SAO=0;SSR=0;VC=SNV;VP=050000000008000100000100;WGT=0;dbSNPBuildID=131
1	92633	rs149776517	C	T	.	PASS	ASP;KGPilot123;RSPOS=92633;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	92794	rs4628451	A	G	.	PASS	CFL;GMAF=0.0521023765996344;RSPOS=92794;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000008040000000100;WGT=0;dbSNPBuildID=111
1	92858	rs147061536	G	T	.	PASS	ASP;KGPilot123;RSPOS=92858;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	92875	rs193157612	T	C	.	PASS	KGPilot123;RSPOS=92875;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	94893	rs76199007	A	G	.	PASS	CFL;GNO;RSPOS=94893;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000008040100000100;WGT=0;dbSNPBuildID=131
1	94930	rs78828224	C	T	.	PASS	GNO;RSPOS=94930;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000000040100000100;WGT=0;dbSNPBuildID=131
1	94932	rs80302002	T	C	.	PASS	GNO;RSPOS=94932;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000000040100000100;WGT=0;dbSNPBuildID=131
1	94986	rs185004859	C	T	.	PASS	KGPilot123;RSPOS=94986;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	94990	rs76864342	T	C	.	PASS	GNO;RSPOS=94990;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000000040100000100;WGT=0;dbSNPBuildID=131
1	94991	rs188832636	G	A	.	PASS	KGPilot123;RSPOS=94991;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	95006	rs76774169	A	T	.	PASS	CFL;GNO;RSPOS=95006;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000008040100000100;WGT=0;dbSNPBuildID=131
1	95083	rs77653505	G	A	.	PASS	CFL;GMAF=0.00319926873857404;GNO;RSPOS=95083;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000008040100000100;WGT=0;dbSNPBuildID=131
1	98583	rs141344361	T	A	.	PASS	ASP;KGPilot123;RSPOS=98583;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	98919	rs1851938	T	A	.	PASS	CFL;RSPOS=98919;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000008000000000100;WGT=0;dbSNPBuildID=92
1	98926	rs79874388	G	A	.	PASS	GNO;RSPOS=98926;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000000040100000100;WGT=0;dbSNPBuildID=131
1	98929	rs12184306	A	G	.	PASS	CFL;GMAF=0.141224862888483;KGPilot123;RSPOS=98929;SAO=0;SSR=0;VC=SNV;VLD;VP=050000000008040010000100;WGT=0;dbSNPBuildID=120
1	98945	rs75356303	C	T	.	PASS	CFL;GMAF=0.0521023765996344;GNO;RSPOS=98945;SAO=0;SSR=0;VC=SNV;VP=050000000008000100000100;WGT=0;dbSNPBuildID=131
1	98946	rs191775802	C	G	.	PASS	KGPilot123;RSPOS=98946;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135
1	98974	rs12184307	A	G	.	PASS	CFL;KGPilot123;RSPOS=98974;SAO=0;SSR=0;VC=SNV;VP=050000000008000010000100;WGT=0;dbSNPBuildID=120
1	98993	rs1851939	G	A	.	PASS	CFL;GMAF=0.0242230347349177;GNO;RSPOS=98993;SAO=0;SLO;SSR=0;VC=SNV;VLD;VP=050100000008040100000100;WGT=0;dbSNPBuildID=92
1	99043	rs12184295	T	A	.	PASS	CFL;RSPOS=99043;SAO=0;SSR=0;VC=SNV;VP=050000000008000000000100;WGT=0;dbSNPBuildID=120
1	99141	rs78611732	G	C	.	PASS	CFL;GNO;RSPOS=99141;SAO=0;SSR=0;VC=SNV;VP=050000000008000100000100;WGT=0;dbSNPBuildID=131
1	99166	rs78627600	C	T	.	PASS	CFL;GNO;RSPOS=99166;SAO=0;SSR=0;VC=SNV;VP=050000000008000100000100;WGT=0;dbSNPBuildID=131
1	99229	rs4109798	C	A	.	PASS	CFL;RSPOS=99229;SAO=0;SLO;SSR=0;VC=SNV;VP=050100000008000000000100;WGT=0;dbSNPBuildID=108
1	99671	rs146209971	A	T	.	PASS	ASP;KGPilot123;RSPOS=99671;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	99687	rs139153227	C	T	.	PASS	ASP;KGPilot123;RSPOS=99687;SAO=0;SSR=0;VC=SNV;VP=050000000004000010000100;WGT=0;dbSNPBuildID=134
1	99719	rs183898652	C	T	.	PASS	KGPilot123;RSPOS=99719;SAO=0;SSR=0;VC=SNV;VP=050000000000000010000100;WGT=0;dbSNPBuildID=135