Up: Data type summary
Up: Data type summary
Data type
BAM| Parent type | AlignedReadSet |
|---|---|
| Description | Binary version of Sequence Alignment/Map format. |
| Presentation type | multifile |
| Presentation | BAM is the compressed binary version of the Sequence Alignment/Map (SAM) format, a compact and index-able representation of nucleotide sequence alignments. Many next-generation sequencing and analysis tools work with SAM/BAM. |
| File extension | bam |
| Example file | alignment1.bam |
| Read by | AligFilterMatches AlignStats BICseq Bam2Counts Bam2Fastq BamCombiner BamReducer BamRegrouper BamReorder BamStats BaseRecalibrator DuplicateMarker GetReads HTSeqCount MethylCall MethylExtract PrepRnaBam RNAVariantCaller Realigner SmallRNAQC SubsetBam UMIQuantifier VariantCaller |
| Written by | Align BSAlign BamCombiner BamReducer BamRegrouper BamReorder BaseRecalibrator BismarkAlign DuplicateMarker FusionMap PrepRnaBam Realigner Star2Pass SubsetBam UMIQuantifier |