Up: Data type summary
Up: Data type summary
Data type
VCF| Parent type | RegionSet |
|---|---|
| Description | Variant Call Format. |
| Presentation type | multifile |
| Presentation | VCF is a text file format (most likely stored in a compressed manner). It contains meta-information lines, a header line, and then data lines each containing information about a position in the genome. Click herefor more information on the VCF format. |
| File extension | vcf |
| Example file | calls1.vcf |
| Read by | Annovar BaseRecalibrator PrepRnaBam Realigner VCF2AnnotatedCSV VCF2CSV VariantAnnotator VariantCaller VariantCombiner VariantLiftover VariantRecalibrator VariantSelector VariantValidator |
| Written by | AnnTools Annovar MethylExtract RNAVariantCaller VariantCaller VariantCombiner VariantLiftover VariantRecalibrator VariantSelector |