AnnotationTable.get.vector | Get a named vector from an AnnotationTable column |
AnnotationTable.read | Read an AnnotationTable object |
Array.add | Add an element to the array |
Array.getFile | Get the file associated to the given key or index |
Array.getFiles | Get the files contained in the array |
Array.getKey | Get the key associated to the given index |
Array.new | Initialize a new Array instance |
Array.read | Read the array index file |
Array.remove | Remove the given key |
Array.size | Get the size of the array |
Array.write | Write the array index file |
copy.dir | Copy Directory |
create.lookup | Create a hashed lookup from strings to indices |
CSV.read | Read a CSV file |
CSV.read.large | Read a CSV file |
CSV.write | Write data frame or matrix to CSV file |
delegate.defined | Tell whether delegate is defined |
extract.directory | Extract Directory From a Filename |
get.delegate.input | Get input filename of delegate |
get.delegate.output | Get output filename of delegate |
get.input | Get input filename |
get.input.array.index | Get the array index file |
get.metadata | Get metadata value |
get.output | Get output filename |
get.output.array.index | Get the array index file |
get.parameter | Get parameter value |
get.temp.dir | Get temporary directory for a component instance |
input.defined | Tell whether input file is available |
latex.figure | LaTeX code for inserting a figure |
latex.quote | Quote a LaTeX string |
latex.table | LaTeX code for a floating table |
latex.tabular | LaTeX code for inserting a tabular environment |
latex.write.main | Write a LaTeX document to an output port |
launch.delegate | Launch delegate. |
LogMatrix.read | Read an LogMatrix matrix from a CSV file |
main | Component main function |
Matrix.read | Read a matrix from CSV file |
png.close | Close a PNG file |
png.open | Open a PNG device |
SampleGroupTable.add.group | Add a group to a SampleGroupTable object |
SampleGroupTable.find.group | Find a sample group that is composed of given group IDs |
SampleGroupTable.get.description | Get description of a group |
SampleGroupTable.get.groups | Get group IDs of a SampleGroupTable object |
SampleGroupTable.get.source.groups | Get vector of source group IDs |
SampleGroupTable.get.type | Get type of given group |
SampleGroupTable.new | Create a new emtpy SampleGroupTable object |
SampleGroupTable.read | Read a SampleGroupTable object |
SampleGroupTable.write | Write a SampleGroupTable object |
SetList.assign | Create or update a set |
SetList.get.ids | Return the set identifiers of a SetList |
SetList.get.members | Return the contents of given set |
SetList.new | Initialize a new SetList instance |
SetList.read | Read a SetList instance from file |
split.trim | Split and Trim a String |
touch.output | Create an empty file for output port |
trim | Remove heading and trailing whitespace from string |
write.delegate.parameter | Write an entry into delegate parameter file |
write.error | Write error message |
write.log | Write log message |