SePIA

RNA sequence processing, integration, and analysis

Downloads

Workflow scripts

RNA, totalRNA, smallRNA, and integration scripts and input files. A short README briefly describes scripts and their execution.

The SePIA workflow and target prediction database used are available for download here. For convenience, a list of publically available TCGA samples, a link to the GEO dataset, annotation files and resources used in this study are provided.


Resources and annotations

The SePIA workflow and target prediction database created and used for the case studies are available for download here.


Case studies

TCGA sequenced breast cancer samples used in the case study are listed as follows:

Result reports

Output generated by the SePIA demo run in Docker. Full SePIA reports generated by the case studies:
Systems Biology Laboratory, University of Helsinki.