Download
Anduril works on Linux. The easiest way to get started is using Docker. Alternatively, you can install natively.
More detailed installation instructions: User Guide.
Docker
docker run -ti --rm anduril/anduril anduril -h
This prints the help message of the Anduril command line tool. Next step: Hello world.
Native installation: Ubuntu
Install time: 30-60 min
sudo apt-get install ant mercurial git default-jdk python r-base-dev
export ANDURIL_HOME=~/anduril
git clone https://bitbucket.org/anduril-dev/anduril --branch stable "$ANDURIL_HOME"
export PATH="$ANDURIL_HOME/bin:$PATH"
anduril build
anduril install tools
Native installation: Other Linux
Replace the sudo apt-get install
command above with commands that install the following mandatory dependencies:
- Java 8, 10 or 11
- Apache Ant
- Mercurial
- Python 2.7
- R 3.0+
Additional bundles
After a basic installation, you may want to install additional bundles using anduril install BUNDLE-NAME
.
Bundle name | Purpose |
---|---|
anima | Image analysis |
flowand | Cytometry analysis |
microarray | DNA/RNA microarray analysis |
sequencing | DNA/RNA sequencing analysis (NGS) |
tools | Commonly used tools. Already installed above. |